The invention discloses a harmless emission processor for poisonous and harmful gas in a sewer well and a sewage well. The harmless emission processor comprises a box body, an activated carbon storagebox, an exhaust fan, an upper cover, a disinfectant storage box and a disinfectant atomizer, wherein the upper cover is fixed to the top of the box body, and the activated carbon storage box, the exhaust fan, the disinfectant storage box and the disinfectant atomizer are all arranged in the box body. The activated carbon storage box is mounted at the lower part of the box body; activated carbon is placed in the activated carbon storage box; the disinfectant storage tank and the disinfectant atomizer are installed on the lower portion of the box body and located above the activated carbon storage tank, the disinfectant storage tank is connected with the disinfectant atomizer through a liquid guide pipe, the exhaust fan is installed above the box body, an exhaust hole is formed in the sideface of the upper cover, an exhaust fan air duct is in sealed connection with the exhaust hole of the upper cover, and the upper cover is fixed to the top of the box body. The bottom of the box body is communicated with the walls of the nearby sewer well and sewage well through a well connecting pipe.