The invention discloses an electrochromatography device, which comprises an infusion system, a shunting system, a quantitative sampling system, a current circuit system, a chromatographic separation system, a temperature control system, a detector, a data processing system and a liquid waste pool, wherein the infusion system is introduced on the basis of reserving the advantages of a traditional separate analysis device and the work which cannot be done by a traditional electrophoresis instrument can be done; the quantitative sampling system is introduced and the problems of cross contamination, poor quantitative reproducibility and the like of a traditional electrophoresis apparatus are solved; the current circuit system is introduced and the multi-mode separate mode can be achieved by only one set of device; a novel chromatographic separation system (open tube-type chromatographic column) is introduced, the whole device has the selectivity of a high-performance liquid chromatographic instrument and is a potential separate analysis device while the problems that a traditional packed column is difficult to prepare, easy to block, short in service life and high in cost are solved; and the electrochromatography device is stable, reliable and simple in operation, and is expected to be popularized and applied to multiple frontier domains of biological medicines, environment analysis, bioscience and the like.