The invention relates to a 5-methoxyl-4,6-dichloropyrimidine preparing method capable of preventing a temperature fluctuation phenomenon from occurring. The preparing method comprises the following steps that: (a)
phosphorus oxychloride is added into a reaction container, then, organic solvents containing 4,6-dyhydroxyl-5-methoxyl
pyrimidine sodium are added into the reaction container in a dropwise manner, and a
reflux reaction is carried out for 2 to 6 hours at 110 to 120 DEG C to obtain a reaction mixture; (b) the reaction mixture is added into deionized water to be hydrolyzed, still standing layering is carried out, and a first
water layer and a first
organic solvent layer are formed; (c) alkali liquor is added into the first
organic solvent layer for regulating the pH value to 6.5 to 7, the still standing layering is carried out again, and a second
water layer and a second
organic solvent layer are formed; and (d) the second organic
solvent layer is distilled for removing the contained organic solvents. The organic solvents containing the 4,6-dyhydroxyl-5-methoxyl
pyrimidine sodium are added into the reaction container in a dropwise manner, so the 4,6-dyhydroxyl-5-methoxyl
pyrimidine sodium is diluted by the organic solvents; the adding speed of the 4,6-dyhydroxyl-5-methoxyl pyrimidine sodium can be controlled; the temperature of the
reaction system can also be controlled; and the temperature fluctuation phenomenon cannot occur.