The invention discloses a lithium-ion secondary battery and a manufacturing method thereof. The lithium-ion secondary battery comprises an anode material, a cathode material, a diaphragm and electrolyte, wherein, the anode material and the cathode material are coated in a metal casing, the diaphragm is arranged between the anode material and the cathode material, and the electrolyte is filled in the diaphragm; the anode material is prepared by mixing a Ni-Co-Mn ternary material with a lithium manganate material base on a proportion of 1-9:9-1 by weight parts; the cathode material is made of graphite; the electrolyte is prepared by mixing ethylene carbonate, dimethyl carbonate with methyl ethyl carbonate based on the volume ratio of 1:1:1; and the diaphragm is porous polypropylene, polyethylene or a modified polymer of the porous polypropylene and the polyethylene. The invention has the advantages of excellent safety performance, least production cost and larger specific capacity, and through safety tests such as overcharge, over-discharge, short circuit, needling, extrusion, heavy impact, hot box and the like, the safety performance meets the standard testing requirements of UL1642, IEC60949-3 and GB / T18287-2004, and products meet the requirements and reach RoHS instruction requirement.