The invention discloses an ecological treatment method for black and odorous water body. According to the ecological treatment method, metabolism capability of microorganisms and the diversity of genes are utilized; pollutants are converted into pollution-free final products for entering into the biogeochemical cycle again; meanwhile, due to the introduction of microorganisms, the biological diversity in water can be increased; all levels of nutrition structures of the water body are improved to be stable and balance is kept. Compared with physical method, migration method and chemical method,the advantages of the invention scheme are that: the conversion process of pollutants can be efficiently and relatively thoroughly completed under mild conditions, the treatment cost is low, the application range is wide, the influence on the environment is small, secondary pollution is avoided, the impact resistance of microorganisms is high, the tolerance to harmful environments such as toxic and harmful substances is high, and in-situ self-renewal can be achieved; repeated adding is not needed, long-term use can be achieved through one-time adding, the effect of rapid and efficient sewagedisposal is achieved, the water environment is effectively improved, and the water self-purification function is completely repaired and restored.