The invention relates to the technical field of cosmetics, in particular to yeast repairing micro essence and a preparation method thereof. The yeast repairing micro essence comprises a phase A, a phase B, a phase C, a phase D and a phase E. The phase A comprises water, allantoin and a chelating agent; the phase B comprises a humectant, xanthan gum, Arabic gum and methylparaben; the phase C is prepared from a humectant and p-hydroxyacetophenone; the phase D comprises nicotinamide and trehalose; the phase E is prepared from a plant extract, a humectant, compound amino acid, dipotassium glycyrrhizinate, sodium pyrrolidone carboxylate, ergothioneine, a soluble collagen cross-linked polymer, hexapeptide-1, oligopeptide-1, saccharomycetes polypeptides, beta-glucan, palmitoyl pentapeptide-4, grease, a bifidus yeast fermentation product sporolysate, maltodextrin, a lactobacillus fermentation product and inulin. The yeast repairing micro essence disclosed by the invention has the effects of replenishing water, preserving moisture, tightening skin, resisting aging, whitening and repairing skin barrier.