The invention relates to a microwave processing method for chrysanthemum tea. The method comprises the following steps of: firstly, picking out satisfactory fresh chrysanthemums, and spreading the chrysanthemums at room temperature to air; performing microwave green removing, quickly reducing the temperature after green removing, and repeatedly kneading the chrysanthemums; and drying, screening, inspecting and packing the chrysanthemums to obtain the finished product of chrysanthemum tea. Compared with the traditional common green removing method through heating, distilling and drying, the method can effectively reserve important drugs and nutrition constituents such as volatile oil, flavone, chlorogenic acid, stevia, choline, amino acids, vitamins, abundant mineral elements and the like contained in the chrysanthemums, and the disinfection effect is improved.