The invention relates to a long-acting organic compound fertilizer and a manufacturing method thereof, which belongs to the manure field. By taking sludge in a municipal sewage treatment plant as main raw material, adding zeolite, urea, ammonium diacid phosphate, potassium chloride and sodium silicate, then being stirred and mixed with the urea, the ammonium diacid phosphate and the potassium chloride after sludge compression, zeolite drying, stirring and mixing, natural air drying or kiln drying and grinding, and spraying the sodium silicate so as to granulate, dry, disinfect and sterilize the mixture, a product is then produced. The long-acting organic compound fertilizer and the manufacturing method solve the problem of land occupation of the sludge in the sewage treatment plant and secondary pollution, and realize the harmless disposal and resource utilization of the sludge. The fertilizer ensures that crops has good growth power, high plants, more grains, stronger lodging resistance and obvious stimulation effect and ensures that the quality of agricultural products is improved. Furthermore, the fertilizer can increase the ability of reserving nutrients in soil, can modify acid or saline alkali sandy soil, can improve soil aggregate structure, can keep fertilizer efficiency and resist crop diseases.