The invention discloses a transparent trust chain constructing system based on virtual machine architecture. The system is provided with a virtual machine monitor on the mainframe, the virtual machine monitor comprises a safety chip drive module, a system call analysis module and a disk analysis measurement module. The invention measures the operation system and the executable code loaded after the operation system is started in the virtual machine monitor, without any modification of the existing operation system and the application program. The invention can obtain low-level operation semantic information, such as the system call and the disk access, of the operation system in the client machine, analyzes the operation semantics of the client machine operation system, and controls the operation of the client operation system on the disk to realize the transparent measurement. The technology can be used in the distributed cooperation environment, and provide transparent trust chain and integrity certification for the operation system. The invention can protect the existing property of the user and enable the existing operation system to support the process level TCG trust chain without any modification.