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79 results about "Structural biology" patented technology

Structural biology is a branch of molecular biology, biochemistry, and biophysics concerned with the molecular structure of biological macromolecules (especially proteins, made up of amino acids, RNA or DNA, made up of nucleotides, membranes, made up of lipids) how they acquire the structures they have, and how alterations in their structures affect their function. This subject is of great interest to biologists because macromolecules carry out most of the functions of cells, and it is only by coiling into specific three-dimensional shapes that they are able to perform these functions. This architecture, the "tertiary structure" of molecules, depends in a complicated way on each molecule's basic composition, or "primary structure."

Targeted hollow gold nanostructures and methods of use

Provided are novel nanostructures comprising hollow nanospheres and nanotubes for use as chemical sensors and molecular specific photothermal coupling agents. The nanostructures can be used in laser-induced phototherapy for treatment of cancer and other disorders. The nanostructures can also be used as a sensor that detects molecules. The nanostructures are of particular use in the fields of clinical diagnosis, clinical therapy, clinical treatment, and clinical evaluation of various diseases and disorders, manufacture of compositions for use in the treatment of various diseases and disorders, for use in molecular biology, structural biology, cell biology, molecular switches, molecular circuits, and molecular computational devices, and the manufacture thereof. The hollow gold nanospheres have a unique combination of spherical shape, small size, and strong, tunable, and narrow surface plasmon resonance absorption covering the entire visible to near IR region.
Owner:BOARD OF RGT THE UNIV OF TEXAS SYST

Control of DNA movement in a nanopore at one nucleotide precision by a processive enzyme

The invention herein disclosed provides for devices and methods that can detect and control an individual polymer in a mixture is acted upon by another compound, for example, an enzyme, in a nanopore. Of particular note is the stability of the system in a saline medium and to detect individual nucleotide bases in a polynucleotide in real time and which may be used to sequence DNA for many hours without change of reagents. The invention is of particular use in the fields of forensic biology, molecular biology, structural biology, cell biology, molecular switches, molecular circuits, and molecular computational devices, and the manufacture thereof.
Owner:RGT UNIV OF CALIFORNIA

Cryoelectron microscope atomic model structure building method and system based on deep learning and application

The invention discloses a cryoelectron microscope atomic model structure building method and system based on deep learning and application. The method comprises the steps of: 1, obtaining a cryoelectron microscope density map data set, and carrying out model training and model testing; 2, inputting a cryoelectron microscope density map and a corresponding amino acid sequence; and 3, carrying out feature coding and extraction on the cryoelectron microscope density map and the corresponding amino acid sequence, and building an atomic structure model. According to the measurement method provided by the invention, the generated amino acid atom model has structural biological characteristics, the structural biological rationality of the predicted amino acid atom model is ensured, accurate prediction of the end-to-end all-differentiable amino acid internal atom structure is finally realized, certain superiority is achieved, and the atomic model effect predicted by a plurality of tests is verified. In addition, the improvement effect in model building in middle and low resolution is also very obvious.
Owner:TSINGHUA UNIV

Epitope polypeptide combination capable of inducing immunity and application thereof

The invention discloses an epitope polypeptide combination capable of inducing immunity and application thereof, belongs to the technical field of biology, and aims to carry out molecular design of related vaccines by utilizing immunoinformatics on the basis of epitope analysis optimization. Based on a structural antigen epitope vaccine design strategy, a B cell epitope, a Th epitope and a CTL epitope on a new coronavirus S protein are determined through immunoinformatics to induce a main neutralizing antibody, activate cellular immune response and induce body fluid and cellular immune balance. The epitope vaccine is designed through connection of a molecular adjuvant and candidate antigen epitopes, antigenicity, physicochemical properties, protein secondary structure and tertiary structure modeling of the epitope vaccine are analyzed, vaccine conformation B cell epitopes are analyzed by means of a structural biological tool, and immune response characteristics of the vaccine are verified through molecular docking with TLR4 and immune response simulation stimulation. Information analysis results show that the designed candidate epitope combination has well balanced humoral immune and cellular immune response capabilities.
Owner:SHANTOU UNIV MEDICAL COLLEGE

Antibody humanization by framework assembly

An improved method for producing humanized antibody or an antigen binding fragment thereof is described. The method, designated framework-assembly, bypasses the reliance on structural biology and the construction of large libraries. It is easier to implement and more efficient than the rational design and empirical methods. Also described are humanized antibodies produced by the method and related framework-assembly library.
Owner:NANJING GENSCRIPT BIOTECH CO LTD

Construction method and application of Escherichia coli cold shock assistant dissolving type expression plasmids

The invention relates to a construction method of Escherichia coli cold shock assistant dissolving type expression plasmids, and a method for preparing a water-soluble heterogenous polypeptide by applying the Escherichia coli cold shock assistant dissolving type expression plasmid. The cold shock assistant dissolving type expression plasmids for realizing small ubiquitin modified protein (SUMO) and exogenous gene fusion expression under the control of a promoter of a cold shock gene is constructed by using a seamless cloning technology. A chimeric cysteine desulfurase is cloned into the plasmids, such as widely-known pCold I and PET28 series plasmids, to obviously improve the water solubility, the stability and the enzyme activity of recombinant proteins. The SUMO has no influences on thetarget protein space conformation of widely-known pCold TF plasmids. The cutting efficiency of an SUMO label is more than 95% when enzyme digestion is performed at 25 DEG C for 1 h according to a ratio of Ulp1 protease to the recombinant protein of 1 U : (0.5-1) mg, so the Escherichia coli cold shock assistant dissolving type expression plasmids are very suitable for preparing proteins having natural N ends in the fields of bioengineering pharmacy and structural biology.
Owner:HUNAN DANWEI BILOGICALTECH

Application of multifunctional graphene grid in three-dimensional reconstruction of cryoelectron microscope

The invention discloses an application of a multifunctional graphene grid in three-dimensional reconstruction of a cryoelectron microscope. The preparation method of the multifunctional graphene grid comprises the following steps: etching a copper foil covered with a graphene film grown by CVD (Chemical Vapor Deposition) to obtain the graphene grid; performing oxygen plasma treatment on the graphene grid; then, adopting an MES buffer solution containing EDC and NHS treat the graphene grid; activating the graphene grid by adopting nitrilotriacetic acid and biotin; and finally reacting with nickel salt. The multifunctional graphene grid can specifically anchor a target biomolecule on the surface of the multifunctional graphene grid, so that the interface problem of air and water is avoided, the orientation distribution of particles can be controlled, and by constructing related protein purification tags to different directions of each biomacromolecule, abundant Euler angles are provided, and the structural analysis of biomacromolecules is more reliable and more efficient, so that the multifunctional graphene grid can promote the universality and repeatability of application of a cryoelectron microscope in structural biological analysis.
Owner:TSINGHUA UNIV

Recombinant archaerhodopsin 4 protein as well as preparation method and application thereof

ActiveCN104672314AIntermediate life extensionGood space foldMicroorganism based processesDepsipeptidesStructural biologyNucleotide
The invention provides a recombinant archaerhodopsin 4 protein. An encoding nucleotide sequence is shown in SEQ ID NO.1, and an amino acid sequence is shown in SEQ ID NO.2. The invention also provides a preparation method of the recombinant archaerhodopsin 4 protein. By utilizing a gene engineering method, an AR4 gene is appropriately modified, and converted into halobacterium L33 for performing protein expression. The invention also provides application of the recombinant archaerhodopsin 4 protein in structural biology research.
Owner:EAST CHINA NORMAL UNIVERSITY

Transcription factor binding site prediction method fusing with DNA shape features

The invention relates to a transcription factor binding site prediction method fusing DNA shape features, belongs to the field of bioinformatics, and provides a new model for predicting transcription factor binding sites by using CNN in combination with DNA sequence and shape feature information by combining knowledge of structural biology, genomics and a deep learning neural network. Meanwhile, a special data set containing DNA shape features and DNA sequence information is constructed, and corresponding DNA shape information is added on the basis of a traditional transcription factor prediction data set. Therefore, the prediction accuracy of the DNA transcription factor binding site is improved.
Owner:OCEAN UNIV OF CHINA
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