The invention relates to a method for extracting gingko powder from gingkoes and preparing gingko healthy wine, comprising the following steps of: 1, selecting high-quality gingko fruit (gingkoes); 2, husking the fruit and removing red skins and fruit cores in a sterile room; 3, taking fruit flesh and pulverizing the fruit flesh into fine paste shape fruit flesh paste; and 4, pouring the fruit flesh paste into 50% of white spirit (the proportion of the paste to the white spirit is 1 to 5), uniformly stirring the mixture, separating the white spirit and a white sediment by using a filtration method after the mixture is deposited for 8 to 10 days, and obtaining gingko fruit wine and the white sediment and drying the white sediment to obtain gingko phenol. The proportion of distiller yeast to glutinous rice to gingko leaves to water in a formulation is 1 to 8 to 2 to 19. The operation method comprises the following steps: washing gingko leaves, drying the gingko leaves, boiling the leaves with water for 15 minutes, squeezing out leaf juice, boiling the leaf juice and the glutinous rice after being washed into porridge, cooling the porridge to 25 DEG C, adding the distiller yeast into the porridge, pouring the mixture into a wine crock, brewing the gingko leaf wine after 10 to 15 days, and obtaining the gingko leaf wine by filtration; blending the gingko fruit wine and the ginkgo leaf wine according to the need to obtain the gingko healthy wine. The gingko healthy wine has abundant nutrition, has a natural health-care function and can resist and cure diseases, delay consenescence and benefit longevity after being drunk for a long time.