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171 results about "Metabolome" patented technology

The metabolome refers to the complete set of small-molecule chemicals found within a biological sample. The biological sample can be a cell, a cellular organelle, an organ, a tissue, a tissue extract, a biofluid or an entire organism. The small molecule chemicals found in a given metabolome may include both endogenous metabolites that are naturally produced by an organism (such as amino acids, organic acids, nucleic acids, fatty acids, amines, sugars, vitamins, co-factors, pigments, antibiotics, etc.) as well as exogenous chemicals (such as drugs, environmental contaminants, food additives, toxins and other xenobiotics) that are not naturally produced by an organism.

Method for simultaneous extraction and analysis of metabolite group and lipid group in microtissue

The invention discloses a method for simultaneous extraction and analysis of a metabolite group and a lipid group in microtissue. The method comprises the following steps: freeze drying to-be-analyzed microtissue, accurately weighing 1 to 25 mg of the freeze-dried microtissue and adding solvents like methanol (MeOH), methyl tert butyl ether (MTBE) and water in certain proportion for extraction; allowing a solution obtained after completion of extraction to be divided into two layers, wherein an upper layer mainly contains nonpolar metabolites and lipids, and the lower layer mainly comprises polar and medium-polar metabolites; and subjecting the upper-layer solution and the lower-layer solution to mixing in proportion and freeze-drying, then carrying out redissolving and then metabonomical analysis based on liquid chromatography-mass spectrometry, subjecting the upper-layer solution to freeze-drying and then to redissolving and carrying out lipidomical analysis based on liquid chromatography-mass spectrometry. The method has the following advantages: metabolites and lipids are extracted as many as possible through one extraction of a small amount of tissue, and through metabonomical and lipidomical analysis, the amount of a tissue sample is saved, which benefits other biochemical analysis of the tissue sample.
Owner:DALIAN INST OF CHEM PHYSICS CHINESE ACAD OF SCI

Salivary metabolic biomarkers for human oral cancer detection

The present invention provides a novel oral cancer and periodontal disease salivary metabolome for use in the diagnosis or for providing a prognosis for oral cancer and periodontal disease in an individual. The present invention also provides novel methods of diagnosing or providing a prognosis for oral cancer or periodontal disease by detecting metabolites found in the saliva of an individual. Finally, the present invention provides kits for the detection of salivary metabolites useful in the diagnosis or prognosis of oral cancer and periodontal disease in an individual.
Owner:RGT UNIV OF CALIFORNIA OFFICE OF TECH TRANSFER THE +2

Prediction of phenotypes and traits based on the metabolome

The invention provides methods for characterizing metabolic profiles, phenotypic profiles and trait profiles in plants or groups of plants. Additionally, methods for establishing an unbiased model between a phenotypic profile and a metabolic profile, or between a trait profile and metabolic profile, are also provided by the invention. Further, methods for using such unbiased models to accurately predict the development of a phenotype of interest or a trait of interest in an independent, immature plant are also provided. In one embodiment, immature plants are selected for use based on their predicted development of a phenotype or trait of interest.
Owner:PIONEER HI BRED INT INC

Methods of using quantitative lipid metabolome data

Described herein in various embodiments are methods for using quantitative and / or comparative lipid metabolite data, particularly for identifying and interpreting individual metabolomic profiles as indicative of metabolic status. The provided methods, for instance, allow analysis of the likelihood or progression of weight gain or weight loss, growth or wasting, obesity, diabetes, and aging in an individual based on measurements of the measurement of the quantity of one or more lipid biomarkers, profiles of such markers, or ratios of such markers.
Owner:TETHYS BIOSCI

Flight time based mass microscope system for ultra high-speed multi mode mass analysis

The present invention aims to provide a time-of-flight based mass microscope system for an ultra-high speed multi-mode mass analysis, for using a laser beam or an ion beam simultaneously to enable both a low molecular weight analysis such as for drugs / metabolome / lipids / peptides and a high molecular weight analysis such as for genes / proteins, without being limited by the molecular weight of the object being analyzed, and for significantly increasing the measuring speed by using a microscope method instead of a microprobe method.
Owner:KOREA RES INST OF STANDARDS & SCI

Compositions and methods for the reduction or prevention of hepatic steatosis

ActiveUS20160067201A1Lower Level RequirementsReduction of non-alcoholic steatohepatitis (NASH)BiocidePeptide/protein ingredientsSteatosisMetabolite
Methods useful for reducing or preventing non-alcoholic steatohepatitis or hepatic steatosis are provided herein. Such methods may comprise administering to a subject in need thereof a sirtuin pathway activator and / or PDE5 inhibitor alone or in combination with an amount of a branched amino acid in free amino acid form, or a metabolite thereof. Also provided herein are compositions and kits for practicing any of the methods described herein.
Owner:NUSIRT SCI

Method for analyzing amine substances in dansyl chloride derived-plasma based on liquid chromatography mass spectrometry

The invention discloses a method for analyzing amine substances in dansyl chloride derived-plasma based on liquid chromatography mass spectrometry. The method is characterized in that dansyl chloride is used as a derivatization reagent to perform derivatization on a metabolite containing primary amine and secondary amine, therefore the retention capability of the amine substances in reversion phase chromatography is increased, the ionization efficiency in mass spectrometric detection is increased, and the purpose of increasing the quantitative accuracy and detection sensitivity of the amine substances is achieved. The method has wide coverage for amine metabolites (comprising amino acid, methylation products, acetylation products, dipeptide and the like), can utilize 100 [mu]L of plasma samples to detect 113 amine substances, supplies the outline information of metabolome of the amine substances, and has the characteristics of good specificity, high accuracy and repeatability, less reagent consumption and the like.
Owner:DALIAN INST OF CHEM PHYSICS CHINESE ACAD OF SCI

Methods of using quantitative lipid metabolome data

InactiveUS20090239253A1Compound screeningApoptosis detectionLipid formationLipid biomarker
Described herein in various embodiments are methods for using quantitative and / or comparative lipid metabolite data, particularly for identifying and interpreting individual metabolomic profiles as indicative of metabolic status. The provided methods, for instance, allow analysis of the likelihood or progression of weight gain or weight loss, growth or wasting, obesity, diabetes, and aging in an individual based on measurements of the measurement of the quantity of one or more lipid biomarkers, profiles of such markers, or ratios of such markers.
Owner:TETHYS BIOSCI

Nitrosated and nitrosylated nebivolol and its metabolites, compositions and methods of use

InactiveUS7138430B2Prevention of platelet aggregation and platelet adhesionAntibacterial agentsBiocideMetaboliteAntioxidant
The invention describes novel nitrosated and / or nitrosylated nebivolol, novel nitrosated and / or nitrosylated metabolites of nebivolol and novel compositions comprising at least one nitrosated and / or nitrosylated nebivolol and / or at least one nitrosated and / or nitrosylated metabolite of nebivolol, and, optionally, at least one nitric oxide donor and / or at least one antioxidant or a pharmaceutically acceptable salt thereof, and / or at least one compound used to treat cardiovascular diseases or a pharmaceutically acceptable salt thereof, and / or at least one nitrosated compound used to treat cardiovascular diseases. The invention also provides novel compositions comprising nebivolol and / or at least one metabolite of nebivolol and at least one nitric oxide donor, and, optionally, at least one antioxidant or a pharmaceutically acceptable salt thereof, and / or at least one compound used to treat cardiovascular diseases or a pharmaceutically acceptable salt thereof, and / or at least one nitrosated compound used to treat cardiovascular diseases. The compounds and compositions of the invention can also be bound to a matrix. The nitric oxide donor is a compound that donates, transfers or releases nitric oxide, elevates endogenous levels of endothelium-derived relaxing factor, stimulates endogenous synthesis of nitric oxide or is a substrate for nitric oxide synthase and may preferably be isosorbide dinitrate and / or isosorbide mononitrate. The antioxidant may preferably be a hydralazine compound or a pharmaceutically acceptable salt thereof. The invention also provides methods for treating and / or preventing vascular diseases characterized by nitric oxide insufficiency; and for treating and / or preventing Raynaud's syndrome; and for treating and / or preventing cardiovascular diseases or disorders.
Owner:NICOX SA

Metabonomics-based early diagnosis marker for chronic obstructive pulmonary disease and application thereof

The invention discloses a metabonomics-based diagnosis marker for chronic obstructive pulmonary disease and application thereof. The diagnosis marker comprises the following 28 blood plasma metabolismmarkers: phosphatidylcholine PC 16:1-36:3, phosphatidylcholine PC 26:0-22:4, phosphatidylcholine PC 26:0-22:3, phosphatidylcholine PC 47:5e, phosphatidylcholine PC 44:11e, phosphatidylcholine PC 16:0-24:5, phosphatidylcholine PC 20:2-20:3, phosphatidylcholine PC 40:10, phosphatidylcholine PC 38:9e, phosphatidylcholine PC 18:1-20:4, phosphatidylcholine PC 16:0-20:3, phenylacetaldehyde, dihydrouracil, nicotinamide, 4-methoxycinnamic acid, ketovaline, threonine, DL-3-aminoisobutyric acid, pyruvic acid, stachyose, caffeic acid, N, N-dimethylaniline, maltotriose, D(-)-gulonate-gamma-lactone, and L-asparaginase. The marker provided by the invention has good classification on metabolome data of patients suffering chronic obstructive pulmonary disease and healthy people, and can accurately distinguish the patients suffering chronic obstructive pulmonary disease from the healthy people.
Owner:PEKING UNIV +1

Biomarkers and kits for diagnosis of liver fibrosis and cirrhosis and use method

The invention provides a group of biomarkers which can be used for detecting liver fibrosis and cirrhosis. The biomarkers refer to metabolite components existing in a biological sample of a subject body and comprise a plurality of metabolites, wherein the metabolites are selected from cholic acid, amino acid and fatty acid. Metabolite combination comprises at least one amino acid, fatty acid and cholic acid, the metabolite combination is differentially expressed in at least one target plasma or serum and in a control plasma or serum. The biomarkers can optionally be combined with clinical indicators for diagnosis of liver fibrosis in the subject body. The biomarker composition has the characteristics of high sensitivity and specificity for pathological staging diagnosis of liver fibrosis patients, and can be clinically applied as a non-invasive means to improve clinical diagnosis and reduce puncture pain of the patients. The invention further provides a use method of the biomarkers andkits containing the biomarkers.
Owner:HUMAN METABOLOMICS INST INC

Customized skin care products and personal care products based on the analysis of skin flora

Present invention relate to a combination of experimental and computational workflows that allow characterization of skin and subcutaneous tissue microbial flora and its associated metabolome, aiming to first evaluate an individual's skin and subcutaneous tissue to determine if any skin condition is as a result of an imbalance or absence of commensal or mutualistic microorganisms or their associated metabolites. The methods and the associated computational platform provided herein relate to conducting a customized or personalized test and obtaining customized or personalized information regarding the skin and subcutaneous tissue flora and its associated metabolome there from also have been disclosed.
Owner:PRODERMIQ

Intracellular amino acid metabolic profiling analysis method

The invention discloses an intracellular metabolic profiling high-flux analysis method of a few of cells (with the number of 103-104). The method comprises simple and efficient cell quenching and metabolite extraction, metabolite derivatization and mass spectrometric detection. The intracellular metabolic profiling high-throughput analysis method has the characteristics of simpleness, fastness, high sensitivity and good repeatability and is suitable for high-throughput analysis of metabolome of cells cultured through a 96-well plate and cells with a low yield, wherein the analysis fields comprise drug large-scale screening, evaluation and stem cell research.
Owner:DALIAN INST OF CHEM PHYSICS CHINESE ACAD OF SCI

Big data-oriented metabolome characteristic data analysis method and system thereof

The invention discloses a big data-oriented metabolome characteristic data analysis method and a system thereof. The method comprises the following steps: A) receiving inputted metabolome characteristic data, cutting into multiple data blocks, and mapping and sending the data blocks into each operation node of a mapping protocol frame; B) utilizing a computational intelligence method to simultaneously optimize weighting values on the data blocks; C) merging the optimized weighting values of the data blocks into a weighting value of the whole metabolome characteristic data and outputting. A data block-dividing processing mechanism of the system provided by the invention is capable of reducing the weighting analysis difficulty and efficiently increasing the forecast accuracy. Due to a parallelization structure, the system can be deployed to multiple computational nodes, so that the operation time is obviously reduced while the efficiency and the stability of the system are ensured. According to the computational intelligence method applied by the system, the complex large-scale optimizing problem is effectively solved. The forecast accuracy is better than the forecast accuracy of the present algorithm, so that more effective forecasting for the target physiological status is realized.
Owner:周家锐 +4

System and process of determining a biological pathway based on a treatment of a biological specimen

Provided herein is a system and method for analyzing microarray data (transcriptome profiles), metabolite data (metabolome profiles), protein level data (proteome profiles), or any combination thereof to determine the biochemical pathways affected by a treatment. The system and method can be used to generate biochemical pathway information for any organism for which metabolic profile data can be obtained. The system and method may allow users to query the pathways generated and to filter the results of queries based on the -omic profile data, pathways involving molecules of interest, notions of biochemical importance, milestone molecules, and other factors. The system and method may also be suitable for discovery of regulatory sequences in genes. In an exemplary use, the system and method can be utilized to identify three genes involved in “de novo” ammoniabiosynthesis” that are induced by light, and was able to identify a putative cis-element, GWTTGTGG, that is likely involved in the regulation of those genes.
Owner:NEW YORK UNIV

Sample pretreatment and detection methods in researches of Botrytis cinerea metabolome based on GC-MS

The invention discloses a Botrytis cinerea metabolome sample pretreatment method, and a metabolome detection method based on gas chromatography-mass spectrometry (GC-MS). The Botrytis cinerea metabolome sample pretreatment method comprises the following steps: culturing Botrytis cinerea on a PDA plate paved with glass paper for 2-4d (preferably 3d), collecting mycelia, inactivating the mycelia by liquid nitrogen, and preserving the inactivated mycelia in an ultralow temperature freezer; carrying out freeze grinding crushing on the obtained mycelium sample, extracting metabolome, and carrying out enzyme inactivation by adopting a frozen methanol-water mixture; and centrifuging, drying, and carrying out an oximation (or hydrazone formation) and silylation two-step derivatization reaction to obtain the pretreated sample for GC-MS detection. The invention also provides the sample detection method through GC-MS. The detection method is carried out under the following detection conditions: a HP-5MS capillary column (30m*0.25mm*0.25[u]m), a sample size of 1[mu]L, programmed heating, an ion source temperature of 230DEG C and a full scanning range of m / z 20-650. Metabolome detection results with good reappearance can be obtained through the extraction and detection methods.
Owner:CHINA AGRI UNIV

Screening and calibrating method of metabolomic data random errors

The invention discloses a screening and calibrating method of metabolomic data random errors. The method comprises the steps that a sample is analyzed through a chromatograph-mass spectrometer to obtain a metabolome profile, the specific value of response intensities of metabolites in every two adjacent quality control (QC) samples is calculated, the specific values are sorted from small to large, 5% of the total number of the specific values are screened to serve as discrete points, the discrete points accounting for 5% of the total number of the specific values are averagely distributed to the two ends of the sorted specific values, and therefore a model is established to screen the random errors in metabolomic data; then a linear fitting model of the specific values is utilized to calibrate the random errors. According to the screening and calibrating method of the metabolomic data random errors, the core is that the model is established through the response intensities of the metabolites in every two adjacent QC samples to screen and calibrate the random errors; the random errors in the metabolomic data can be screened and calibrated efficiently and accurately, and the quality of the metabolomic data can be improved.
Owner:DALIAN UNIV OF TECH

Metabonomics analysis method base on acute anaphylactic reaction

The invention discloses a metabonomics analysis method base on acute anaphylactic reaction. The invention mainly starts from the systems biology, and applies a UPLC-QTof / MS technology platform for UPLC and SPE-RRLC-Q-TOF combination, and establishes an acute anaphylactic reaction guinea pig serum metabonomics evaluation model, and provides a basis for further research of medicament acute anaphylactic reaction. During analysis, the UPLC and SPE-RRLC-Q-TOF combination technology is used for detecting serum samples of normal guinea pig and experiment guinea pig with acute anaphylactic reaction generated by induction, and a metabolome spectrogram is obtained by an acquisition method after optimization, and a mode identification method suitable for evaluating animal acute anaphylactic reaction is established for analyzing the metabolome data, which establishes a base for subsequently and furtherly screening biological tag with characteristics and developing a new animal acute anaphylactic reaction detection method.
Owner:HUNAN INST FOR FOOD & DRUG CONTROL

Method for analyzing microalgae metabolome

ActiveCN102495152AFacilitating Metabolic ResearchComponent separationQuantitative ResultDerivatization
The invention discloses a method for analyzing a microalgae metabolome, comprising the following steps: collecting and quenching microalgae cells, extracting metabolites in the cells, carrying out derivatization on the metabolites, and finally analyzing a sample through GC-MS to obtain a metabolome result. According to the invention, the method relates to the termination of metabolic reaction, the extraction of the metabolites, and the analysis of the metabolites, thus qualitative and quantitative results of the microalgae metabolites under different cultural conditions are acquired. The method has important meanings for promoting the research of microalgae metabolism.
Owner:TIANJIN UNIV

Generating, viewing, interpreting, and utilizing a quantitive database of metabolites

InactiveUS20110172926A1Improve predictive diagnosticsImprove accuracyData processing applicationsData visualisationToxinMetabolome
This disclosure provides methods for the creation of a quantitative database of metabolites, particularly lipid metabolites, using chromatographic technology; methods for assembling that information into a visual format for interpretation, and methods of this information to identify and understand metabolome-wide effects, for instance those effects influenced by pharmaceuticals, genes, toxins, diet or the environment. Also provided are metabolite databases, such as lipid metabolite databases, that are stored on a computer readable medium, which include quantitative measurements of a plurality of metabolites.
Owner:TETHYS BIOSCI

Biomarker for preoperative identification of benign and malignant thyroid nodules, kit and application thereof

The invention relates to a biomarker for preoperative identification of benign and malignant thyroid nodules, a kit and application thereof. The level of 17 metabolites in peripheral blood plasma of a thyroid nodule patient is detected through metabonomics analysis, and omics analysis and a machine learning method are combined to construct a diagnosis model and evaluate the thyroid cancer diagnosis efficiency by using a subject working curve (ROC). The area of the metabolic marker combination diagnosis model composed of the metabolites under the ROC curve in thyroid nodule diagnosis can reach 95.05%, the sensitivity and specificity are both higher than 88%, and the metabolite marker combination diagnosis model can be applied to identification of thyroid benign and malignant nodules.
Owner:THE FIRST AFFILIATED HOSPITAL OF SUN YAT SEN UNIV

Method for determining age of ginseng roots using chromatogramphy-mass spectroscopy

Disclosed is a method for determining the age of ginseng roots using chromatography-mass spectroscopy. It comprises: extracting a metabolome from a ginseng sample; subjecting the metabolome to liquid chromatography-mass spectroscopy (LC / MS) or gas chromatography-mass spectroscopy (GC / MS) to afford an analysis result; converting the LC / MS or GC / MS analysis result to statistically accessible data; and performing a statistical analysis of the data to determine the age of ginseng sample. Based on the metabolite fingerprinting of metabolomics, the method can determine the exact age of ginseng roots from a very small amount of roots within a short time in a non-destructive manner with minimal damage to the roots.
Owner:KOREA UNIV RES & BUSINESS FOUND +1

Xinjiang artemisia plant metabonomics analysis method

The invention discloses a Xinjiang artemisia plant metabonomics analysis method. The method comprises the following steps: 1) taking dry powder of different tissue organs of Xinjiang artemisia, respectively performing steps of extraction with an organic solvent, ultrasonic wave, centrifugation, and condensation to obtain a concentrate, then performing redissolving, ultrasonic wave, centrifugationand filtering on the concentrate, and taking supernatants of metabolome of the different tissue organs; 2) employing a liquid chromatogram-tandem mass spectrometry on the supernatants of metabolome ofthe different tissue organs, and processing the obtained data; employing multivariable statistics analysis to obtain differential variables, according to a high-resolution mass-to-charge ratio and tandem mass spectrum data of the differential metabolite, and combining a metabolite database Metlin retrieval contrast analysis, obtaining the difference of the plant metabolome of the different tissueorgans of the Xinjiang artemisia. The method has the advantages that pre-treatment operation on a sample is simple, the stability of an analysis method is good, sensitivity is high, a metabolite covering range is wide, and the metabolome information of the plant can be efficiently and comprehensively obtained.
Owner:MINZU UNIVERSITY OF CHINA

Large-scale metabolomequalitationmethod

ActiveCN107817309AAchieve scale and qualitativeAchieving Scale QualitativeComponent separationBiological bodySecondary metabolite
The invention provides a large-scale metabolome qualitation method. By using a liquid chromatogram-high resolution mass spectrum non-targeting in-source dissociation technique, systematic large-scalequalitation is carried out on plant metabolome by using multiple strategies such as characteristic neutral loss, multiple neutral loss combinations, neutral loss with multi-stage mass spectrums and characteristic daughter ion recognition, laying a base for further study on variation of plant metabolome. Based on the advantages of high-resolution and high-sensitivity mass spectrums, large-scale characteristic structured metabolin is identified, the types of metabolin can be rapidly locked, the qualitative performance of a conventional mass spectrum method is widened, the metabolin qualitation efficiency is improved, the metabolome cover range is widened, particularly the difficulty of qualifying secondary metabolite of plants is partially solved, and meanwhile, reference can be provided forlarge-scale qualitation study of other living bodies.
Owner:DALIAN INST OF CHEM PHYSICS CHINESE ACAD OF SCI

Analysis method of cecal metabolome in broiler chicken

The invention relates to the field of biological analysis methods, and in particular to an analysis method of cecal metabolome in a broiler chicken. The change of metabolites and metabolic pathways ofcecal contents after the broiler chicken eats a yeast culture produced at different fermentation time is detected by jointly using a gas chromatography-mass spectrometry, thereby determining the influence of the yeast culture on the cecal metabolic regulation and the metabolites of the broiler chicken. Metabolomics data show that yeast culture is used for feeding the broiler chicken, the cecal differential metabolites mainly involve in amino acid metabolism and cholesterol metabolism, and participates in fat, vitamin digestion and absorption processes.
Owner:JILIN AGRICULTURAL UNIV

Sample pretreatment method for plant metabolome analysis

The invention discloses a sample pretreatment method for plant metabolome analysis. The method comprises the following steps: sampling and inactivating, sample homogenizing and grinding, centrifugal filtration and the like; various tissue parts are separately sampled, are frozen and inactivated quickly by adopting liquid nitrogen, and are homogenized and ground by high-speed oscillation in a liquid nitrogen environment; a mixed sample is extracted by adopting ultrasonic in an assistant manner after being obtained; finally, protein is removed through high-speed centrifugation. According to the sample pretreatment method, the defects of temperature change, easiness in pollution, serious sample waste, relatively poor repeatability, uneven sample mixing, relatively low work efficiency, high operating danger coefficient, high requirements on the proficiency and work experience of operating personnel and the like are overcome. The sample pretreatment method can be well applied to hard tissue sampling, homogenizing, grinding and extracting of woody plant samples of tea trees and the like, and is a rapid, nondestructive and pollution-free sample pretreatment technology for performing a metabonomics analysis test. The sample pretreatment method can also be applied to a quality component analysis, RNA (Ribonucleic Acid) extraction, a proteomics analysis and the like.
Owner:TEA RES INST CHINESE ACAD OF AGRI SCI
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