The invention provides an isonaringin extraction and separation process, which belongs to the technical field of plant extraction. The isonaringin extraction and separation process comprises the following steps: (1) carrying out reflux extraction on an extraction raw material by using an extraction agent to obtain a flavone concentrated solution; (2) adjusting the pH value of the flavone concentrated solution to 7.5-8.5 by using an inorganic acid, standing, carrying out suction filtration, and taking a mother solution, namely, a liquid containing isonaringin; (3) continuing to adjust the pH value to 5-7 with an inorganic acid, uniformly stirring, carrying out crystallizing, and carrying out suction filtration to obtain a crude isonaringin product; (4) adding the crude isonaringin product into a polar organic solvent, heating the organic solvent to dissolve the crude isonaringin product, carrying out filtering to remove insoluble impurities, carrying out concentrating and crystallizing,carrying out suction filtration, carrying out washing with water, and carrying out drying to obtain a semi-finished isonaringin product; and (5) dissolving the semi-finished isonaringin product witha polar organic solvent, stirring for dissolving, carrying out filtering to remove impurities, adding pure water to dilute the solution, stirring, standing for crystallization, carrying out suction filtration, carrying out washing with pure water to neutrality, and carrying out drying to obtain a yellow isonaringin product. Isonaringin is obtained through extraction, separation and refining, the content reaches up to 90% or above, and the purity is 95% or above.