The invention provides a main and secondary clack tracker and the tracking method for a warning radar. The tracker comprises antennas 1-5, a servo platform 6, PIN attenuators 7-11, high-frequency amplifiers 12-16, frequency mixers 17-21, mid-frequency amplifiers 22-26, a local oscillation assembly 27, a digital receiver 28, wave detectors 29-30, a summing circuit 34, and a signal processor 35. The antennas 1-5 are mounted on the servo platform 6, and are respectively connected with the inputs of the PIN attenuators 7-11; the outputs of the PIN attenuators 7-11 are connected with the inputs of the high-frequency amplifiers 12-16; the local oscillation assembly 27 is controlled by the processor, and generates microwave signals with fixed frequency difference from the frequency of the incident signals, and is connected with the frequency mixers 17-21 together with the output signals of the high-frequency amplifiers; the outputs of the frequency mixers 17-21 are connected with the inputs of the mid-frequency amplifiers 22-26, the outputs of which are connected with the digital receiver 28 and the wave detectors 29-30; the outputs of the wave detectors 29-30, passing the summing circuit 34, are connected with the signal processor 35 together with the output from the digital receiver 28. By controlling the front ends of microwaves through the arrival signals of the front ends of microwaves and the signal processor, the invention combines EKF (extended Karman filtering) arithmetic with missile controlling value, capture concurrently the main and secondary clack of a radar, so as to attack a target precisely.