The invention discloses microemulsion gel of an anti-human papillomavirus(HPV) plant extract and a preparation method and application of the microemulsion gel. The microemulsion gel comprises a plant extract and auxiliary materials, and the plant extract includes one or more of a rhizoma curcuma extract, a folium eucalypti extract, a radix sophorae flavescentis extract, a fructus cnidii extract, a radix stemonae extract and a cortex phellodendri extract. According to the invention, the natural plant extract not only can serve as a component of a carrier but also can serve as an active ingredient to enhance the medicine efficacy; by taking carbomer as a matrix, a local topical preparation with antibacterial, anti-inflammatory and antiviral functions is prepared; and the microemulsion gel used for HPV infection and prevention, bacterial and fungal vaginitis, cervical erosion, and daily care of women's private parts especially can reduce mRNA expression levels of key oncogenes E6 and E7 in Hela cells. The microemulsion gel prepared by the invention has high safety, high stability, convenience in administration and high patient compliance; and the processing technology is simple, cost is low and large-scale production is facilitated.