The present invention provides a dual-frequency phase-shift three-dimensional measurement method and system. The measurement method includes the following steps that: a computer is utilized to generate two sets of phase shift projection fringes with different frequencies, the fringe period of the phase shift projection fringes satisfies an equation that T1=(A+1 / C1)T2, wherein T1 is a low-frequency stripe period, and T2 is a high-frequency stripe period, if an equation that A=[T1 / T2] is satisfied, it is indicated that the greatest integer of the [T1 / T2] is obtained through floor operation, wherein T2 is the integer multiple of C1, wherein C1 is the multiple of a set range to the low-frequency period T1; the projection fringes are projected onto the surface of a measured object; a wrapping phase is solved through four-step phase-shift solution; and an absolute phase is obtained through a determined mathematical relationship, and unwrapping is realized. With the dual-frequency phase-shift three-dimensional measurement method and system provided by the invention adopted, tolerance can be expanded, and the problem of misjudgment on the serial numbers of fringes can be solved.