The invention relates to a process for preparing 1,3-propylene glycol (1,3-PDO) by means of hydrogenating high-concentration 3-methyl lactate (3-MHP). The process comprises the following flow: gasifying 3-MHP and H2 in a mixed manner, feeding the mixed gas into a first hydrogenation reactor, feeding a hydrogenation product into a gas-liquid separator to separate mixed gas of a heavy component I, hydrogen and a light component I; feeding the mixed gas into a first separating tank to separate H2 out for recycling, and feeding a retaining liquid phase into a first rectification tower for separating into a light component II and a heavy component II; feeding the heavy component II and the heavy component I into a second hydrogenation reactor for further hydrogenating, feeding a hydrogenation product into a second separating tank for separating H2 out for recycling, feeding remaining components into a second rectification tower into a light component III and crude 1,3-PDO, and refining the crude 1,3-PDO to obtain a 1,3-PDO product; separating the light component II from the light component III to obtain methyl alcohol and n-propyl alcohol. In the entire process, the high-concentration 3-MHP is used for hydrogenating, so that the energy consumption of solvent separation is lowered. Meanwhile, by two-segment hydrogenation is performed, the yield of the 1,3-PDO is increased.