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95 results about "Protein network" patented technology

Biomarkers for Diagnosis and Treatment of Chronic Lymphocytic Leukemia

A molecular classification procedure based on activity levels of modules in protein networks, wherein the proteins are biomarkers for chronic lymphocytic leukemia (CLL), and method for use of the subnetworks to distinguish between patients at low or high risk of progression of their disease.
Owner:RGT UNIV OF CALIFORNIA

A method of identifying protein compounds by using a fruit fly optimization method

The invention provides a method of identifying protein compounds by using a fruit fly optimization method. The method comprises the steps of converting a protein-protein interaction network into a undirected graph, performing pretreatment on the edges and nodes of the protein-protein interaction network, establishing a dynamic protein-protein interaction network, setting parameters, forming fruit fly positions, matching fruit flies with the protein-protein interaction network, determining initialization fruit fly positions, determining the fruit fly odor concentration, updating the fruit fly positions, generating a protein compound, and filtering the protein compound. The method gives full consideration to the dynamic nature of the protein network, the protein compound inner core-attachment structure and the locality and wholeness of the protein-protein interaction network and can identify protein compounds accurately. The results of simulation experiments show that the performance of the indexes such as the accuracy and the recall ratio are excellent. Compared with other clustering methods, the method, based on the characteristics of the protein network and the protein compounds, realizes the protein compound identification process and improves the protein compound identification accuracy.
Owner:SHAANXI NORMAL UNIV

Combinatorial multidomain mesoporous chips and a method for fractionation, stabilization, and storage of biomolecules

ActiveUS20110065207A1High protein recoveryLow protein amountElectrolysis componentsSamplingFractionationTherapeutic effect
A new fractionation device shows desirable features for exploratory screening and biomarker discovery. The constituent MSCs may be tailored for desired pore sizes and surface properties and for the sequestration and enrichment of extremely low abundant protein and peptides in desired ranges of the mass/charge spectrum. The MSCs are effective in yielding reproducible extracts from complex biological samples as small as 10 μl in a time as short as 30 minutes. They are inexpensive to manufacture, and allow for scaled up production to attain the simultaneous processing of a large number of samples. The MSCs are multiplexed, label-free diagnostic tools with the potential of biological recognition moiety modification for enhanced specificity. The MSCs may store, protect and stabilize biological fluids, enabling the simplified and cost-effective collection and transportation of clinical samples. The MSC-based device may serve as a diagnostic tool to complement histopathology, imaging, and other conventional clinical techniques. The MSCs mediated identification of disease-specific protein signatures may help in the selection of personalized therapeutic combinations, in the real-time assessment of therapeutic efficacy and toxicity, and in the rational modulation of therapy based on the changes in the protein networks associated with the prognosis and the drug resistance of the disease.
Owner:BOARD OF RGT THE UNIV OF TEXAS SYST

Method of adopting firework algorithm to recognize protein complex

The invention provides a method of adopting a firework algorithm to recognize a protein complex. The method includes following steps: converting a protein interaction network into an undirected graph; pre-treating sides and nodes of the protein interaction network; building a dynamic protein interaction network; setting parameters; initializing positions of fireworks; simulating firework explosion to generate spark; selecting part of good points from the spark to serve as fireworks, wherein all fireworks form a class; filtering undesirable classes; outputting a finally-acquired class. The method takes dynamic nature of a protein network and locality and globality of a core-accessory structure inside the protein complex and the protein interaction network into consideration, and the protein complex can be recognized accurately. Simulation experiment results show that performance of indexes like accuracy and recall ratio is excellent. Compared with other clustering methods, the method has the advantages that characteristics of the protein interaction network and the protein complex are combined to recognize the protein complex, and recognition accuracy of the protein complex is improved.
Owner:SHAANXI NORMAL UNIV

MicroRNA-disease association prediction method based on multi-mode stacking automatic coding machine

The invention discloses a microRNA-disease association prediction method based on a multi-mode stacking automatic coding machine. The method comprises: forming microRNA sequence features and disease semantic similarity features; constructing a microRNA-protein-disease network, a microRNA-mRNA-disease network and a microRNA-lncRNA-disease network, and respectively obtaining network adjacent characteristics between microRNA and protein, between disease and protein, between mRNA and lncRNA and between disease and lncRNA by using a LINE network embedding method; mining, by using a multi-mode stacking automatic coding machine, the advanced abstract features of four features (self attribute features, protein network adjacent features, mRNA network adjacent features and lncRNA network adjacent features) of microRNA and diseases, thereby reducing the time complexity of a model and improving the prediction accuracy of the model; and training and predicting the processed features by using a CatBoost classifier, and taking an average value of prediction scores of the four features as a final prediction score. According to the method, the problems of high time consumption and high cost of a traditional biological experiment method are solved, so that a better classification effect is achieved, and the potential incidence relation between microRNA and diseases is predicted with higher accuracy.
Owner:XINJIANG TECHN INST OF PHYSICS & CHEM CHINESE ACAD OF SCI

Method for screening tumor protein markers on basis of multilayer complex network

ActiveCN106407742AScreening method is simpleSimple methodBiostatisticsProteomicsNODALCancers diagnosis
The invention provides a method for screening tumor protein markers on the basis of a multilayer complex network. According to the method, node betweennesses of a random forest mode and of a complex network are combined to provide a new visual angle to discover the tumor pathogenic factors and diagnosis markers. Through bioinformatics and mathematic statistical analysis, the correlation of multilayer protein network data is established and a screening method which is more convenient and higher in correctness is disclosed, so that more valuable reference is provided or the cancer diagnosis and drug discovery.
Owner:赵毅

Combinatorial multidomain mesoporous chips and a method for fractionation, stabilization, and storage of biomolecules

A new fractionation device shows desirable features for exploratory screening and biomarker discovery. The constituent MSCs may be tailored for desired pore sizes and surface properties and for the sequestration and enrichment of extremely low abundant protein and peptides in desired ranges of the mass / charge spectrum. The MSCs are effective in yielding reproducible extracts from complex biological samples as small as 10 μl in a time as short as 30 minutes. They are inexpensive to manufacture, and allow for scaled up production to attain the simultaneous processing of a large number of samples. The MSCs are multiplexed, label-free diagnostic tools with the potential of biological recognition moiety modification for enhanced specificity. The MSCs may store, protect and stabilize biological fluids, enabling the simplified and cost-effective collection and transportation of clinical samples. The MSC-based device may serve as a diagnostic tool to complement histopathology, imaging, and other conventional clinical techniques. The MSCs mediated identification of disease-specific protein signatures may help in the selection of personalized therapeutic combinations, in the real-time assessment of therapeutic efficacy and toxicity, and in the rational modulation of therapy based on the changes in the protein networks associated with the prognosis and the drug resistance of the disease.
Owner:BOARD OF RGT THE UNIV OF TEXAS SYST
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