A method for separating purified seabuckthorn flavonoid from large berry seabuckthorn marc. The invention relates to a method for separating purified seabuckthorn flvonoid from large berry seabuckthorn marc. The invention solves the problems in the existing separation and purification method of seabuckthorn flavonoid, such as tedious method, complicated techniques, high cost of separation and purification, easy damage to the activity of flavonoid and low purity of flavonoid. The method for separating purified seabuckthorn flavonoid from large berry seabuckthorn marc disclosed by the invention comprises the following steps: first, degreasing the raw materials; second, ultrasonic wave extracting and centrifugating; third, adding metal salt to extracting solution to lead complex reaction between flavonoid and metal, agitating, tempering the pH of solution and collecting sediment; and fourth, adding decomplexing additive to resolve sediment, concentrating in a decompressing way to dryness, using ethanol to dissolve and filter, concentrating filtrate, and obtaining the separated and purified seabuckthorn flavonoid powder after drying. The method for separating purified seabuckthorn flavonoid from large berry seabuckthorn marc disclosed by the invention can ensure the full improvement of the purity of the purified seabuckthorn flavonoid, and maintains the original biological activity of the natural flavonoid, the seabuckthorn flavonoi is safe and nontoxic, and the method disclosed by the invention has the advantages of low production cost and simple process, and is suitable for the large-scale production of the seabuckthorn flavonoid.