The invention discloses a coronary artery virtual stent implantation method and system based on haemodynamics analysis. The coronary artery virtual stent implantation method comprises the steps that CTA image data of a patient are read, plaque is identified, a vascular three-dimensional image model is constructed, the plaque is removed, and the position of the plaque is recorded; the physiological parameters of the patient is received, a CFD boundary condition is set, and CFD calculating is conducted; according to a three-dimensional vascular form, a plaque characteristic and FFR values throughout blood vessels, a lesion is identified; according to the identified lesion, a stent specification database and a virtual stent implantation strategy, an implantation scheme is generated, and a new vascular three-dimensional geometric model is generated; under the new three-dimensional geometric model, fluid calculation is conducted again, according to a preset selecting standard, an optimal stent implantation scheme is output. According to the coronary artery virtual stent implantation method and system, blood vessel stenosis degree calculating, stent implantation strategy generating and quantitative evaluating of the virtual stent implantation effect are completed automatically, the operation scheme is planned accurately, the doctor decision efficiency is improved effectively, and the risk of dependence on the artificial judgment is reduced.