The invention discloses a high-
throughput method for segregating a quantitative character regulatory
gene, which comprises the following steps of: 1) construction of a target character segregation
population, in which the
population is a
population in two parent hybridization progenies (F2 and F3), a DH
system and a RIL; 2) mixing of extreme samples and segregation of
total RNA in the population, in which a progeny segregation population is divided into three categories according to character
phenotype; 3)
gene expression analysis, in which the difference and sameness of
gene expressions between two extreme mixed samples are compared by utilizing a
gene expression analysis method, namely one of
chip, EST sequencing, subtraction, cDNA-AFLP, and the like; and 4) acquisition and
verification of a
candidate gene, in which a
differential expression gene between the two extreme mixed samples is found and is a candidate regulatory gene related to target character, and the function of the gene is verified through
transgene,
gene expression,
molecular marker correlation and a contribution
rate analysis method to obtain a
target gene with regulatory character
phenotype. The method is suitable for the segregation of a certain quantitative character regulatory gene controlled by multigene of all organisms, and is a simple, quick, high-
throughput and economical gene segregation method.