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317 results about "SYBR Green I" patented technology

SYBR Green I (SG) is an asymmetrical cyanine dye used as a nucleic acid stain in molecular biology. The SYBR family of dyes is produced by Molecular Probes Inc., a wholly owned subsidiary of Life Technologies Corporation. SYBR Green I binds to DNA. The resulting DNA-dye-complex absorbs best 497 nanometer blue light (λₘₐₓ = 497 nm) and emits green light (λₘₐₓ = 520 nm). The stain preferentially binds to double-stranded DNA, but will stain single-stranded (ss) DNA with lower performance. SYBR Green can also stain RNA with a lower performance than ssDNA.

Flow-cytometry-based method for rapidly measuring heterotrophic bacteria in eutrophic lake

InactiveCN103926189AShorten the timeRapid detection quantityIndividual particle analysisEutrophicationStaining
The invention aims to develop a flow-cytometry-based method for rapidly measuring heterotrophic bacteria in a eutrophic lake. The method is a flow-cytometry-based bacterium counting method. The method comprises the following steps of fixing a sample, performing ultrasonic processing, filtering, performing SYBR Green I dyeing, detecting the heterotrophic bacteria by utilizing a flow cytometer, and acquiring forward and lateral scattering light, an SYBR Green I green fluorescence signal and a chlorophyll a red fluorescence signal of autotrophic plankton, wherein the SYBR Green I green fluorescence signal is used for setting a threshold value; and eliminating the influence of the nannoplankton on bacterium detection by utilizing the forward and lateral scattering light, separating the plankton from abiological particles and cellular debris according to the intensity of the SYBR Green I green fluorescence signal, and separating the bacteria from phytoplankton according to the intensity of the chlorophyll a red fluorescence signal of the autotrophic plankton, thereby obtaining the accurate number of the heterotrophic bacteria. The method has the time-saving and labor-saving effects, the large-scale ecological survey can be developed, and the counting precision and accuracy of the bacteria are improved.
Owner:NANJING INST OF GEOGRAPHY & LIMNOLOGY

Multiplex real-time fluorescence PCR (polymerase chain reaction) detection primer and method for porcine rabies virus, porcine parvovirus and porcine circovirus type 2

The invention discloses a multiplex SYBR Green I real-time fluorescence PCR (polymerase chain reaction) detection primer and method for porcine rabies virus, porcine parvovirus and porcine circovirus type 2. The primer is obtained through synthesis according to design. The multiplex SYBR Green I real-time fluorescence PCR detection method for detecting porcine rabies virus, porcine parvovirus and porcine circovirus type 2 by utilizing the primer comprises the following steps: extracting the DNA of a sample, and then, detecting the sample by utilizing a SYBR Green I real-time fluorescence PCR reaction system and a SYBR Green I real-time fluorescence PCR amplification program. The invention has the beneficial effects that three types of viruses, namely the porcine rabies virus, the porcine parvovirus and the porcine circovirus type 2, can be simultaneously and effectively diagnosed and detected; non-specific swine fever virus, porcine reproductive and respiratory syndrome virus and swine influenza virus can not be detected; and the invention is beneficial to identification and diagnosis of the breeding disorder virus of a pregnant swine, and has better sensitivity, repeatability and stability.
Owner:HENAN AGRICULTURAL UNIVERSITY

Method for detecting miRNA (micro Ribose Nucleic Acid) by improved stem-lop primer qRT-PCR (Quantitative Reverse Transcription Polymerase Chain Reaction)

The invention relates to a method for detecting miRNA (micro Ribose Nucleic Acid) by an improved stem-lop primer qRT-PCR (Quantitative Reverse Transcription Polymerase Chain Reaction). The method comprises the steps: (1), designing a miRNA detection primer, wherein a stem-loop primer comprises two parts of a general stem loop sequence and a specific primer sequence which is in complementary pairing with a 3' end of a target miRNA, a base number which is in complementary pairing with the target miRNA is 11bp, a downstream primer needle of qPCR is specific to a general stem loop sequence, an upstream primer needle is specific to a 5' end of the target miRNA, a GC tail is added in the 5' end of the upstream primer so that the annealing temperatures of the upstream primer and the downstream primer are close; (2), performing inverse transcription on the target miRNA into cDNA (complementary Desoxvribose Nucleic Acid); and (3), performing a quantitative PCR amplification and detecting by adopting an SYBR Green qPCR detection method. The method disclosed by the invention is good in specificity, and high in sensitivity; and one downstream primer is only synthesized, and an SYBR Green I fluorochrome method is adopted, and thus the cost is greatly saved.
Owner:DONGHUA UNIV

Dual SYBR Green I real-time fluorescence PCR detection primer and method for porcine pseudorabies virus and porcine circovirus type 2

The invention discloses a dual SYBR Green I real-time fluorescence polymerase chain reaction (PCR) detection primer and a dual SYBR Green I real-time fluorescence PCR detection method for porcine pseudorabies virus and porcine circovirus type 2. The primer is designed and synthesized, and the dual SYBR Green I real-time fluorescence PCR detection method for the porcine pseudorabies virus and the porcine circovirus type 2 by using the primer comprises the following steps of: extracting deoxyribose nucleic acid (DNA) of a sample; and detecting the sample by using an SYBR Green I real-time fluorescence PCR reaction system and an SYBR Green I real-time fluorescence PCR amplification program. By the primer and the method, two viruses, namely the porcine pseudorabies virus and the porcine circovirus type 2 can be detected simultaneously, and porcine parvovirus, classical swine fever virus, porcine reproductive and respiratory syndrome virus and swine influenza virus cannot be detected. The primer and the method have the characteristics of higher sensitivity, repeatability and stability, and contribute to the identification and the diagnosis of pregnant sow reproductive disturbance virus disease.
Owner:HENAN AGRICULTURAL UNIVERSITY

Real time fluorescent quantitative PCR detection method for blue algae producing microcystic toxins

InactiveCN101216416AGood quantitative repeatabilityGood quantitative repeatability and fast and accurateMicrobiological testing/measurementMaterial analysis by optical meansPhylum CyanobacteriaFluorescence
The invention relates to a realtime fluorescent quantitative PCR detection method of cyanobacteria producing microcystin (MC) for rapidly, accurately and quantitatively detecting cyanobacteria producing microcystin (MC) in eutrophic water body of a freshwater lake. The method comprises the following steps of: collecting and processing a lake water sample and extracting the total DNA; carrying out realtime fluorescent quantitative PCR detection of mcyA-CD gene fragment by using SYBR Green I chimeric fluorescence method; recording the fluorescence values and C(t) values of a standard curve sample, a positive reference, a negative reference and a sample to be detected; drawing a standard curve by a computer; and calculating the copy number of the mcyA-Cd gene fragments in the sample to be detected and the concentration of cyanobacteria producing MC. The inventive method can rapidly and accurately detect concentration of cyanobacteria producing MC in eutrophic water body of freshwater lake and has good repeatability.
Owner:SHANGHAI JIAO TONG UNIV

Internal reference gene capable of stable expression in different tissues of Sogatella furcifera, and screening method and application thereof

InactiveCN104962643ARich internal reference gene resourcesSpecificMicrobiological testing/measurementFermentationNucleotideScreening method
The invention relates to an internal reference gene capable of stable expression in different tissues of Sogatella furcifera, and a screening method and application thereof, belonging to the technical field of biology. The nucleotide sequence of the internal reference gene RPL9 is disclosed as SEQ ID NO:7. The method comprises the following steps: designing degenerate primers according to other insect related gene sequences disclosed in NCBI, carrying out PCR (polymerase chain reaction) to obtain 6 common internal reference gene partial nucleotide sequences of Sogatella furcifera, and carrying out cloning, sequencing and NCBI database Blast comparison to determine the partial sequences of the Sogatella furcifera internal reference gene; and designing specific quantitative primers on the basis of the partial sequences, establishing an RT-qPCR (reverse transcription-quantitative polymerase chain reaction) process based on an SYBR Green I dye technique, and screening out the internal reference gene RPL9 capable of stable expression in different tissue parts of Sogatella furcifera by using a fluorescent quantitative PCR technique. The internal reference gene lays solid foundation for researching gene expression level of different tissue parts and gene functions of Sogatella furcifera in future.
Owner:INST OF PLANT PROTECTION CHINESE ACAD OF AGRI SCI

Kit for detecting proviral DNA (Deoxyribonucleic Acid) of HIV (Human Immunodeficiency Virus)

The invention discloses a kit for detecting the proviral DNA (Deoxyribonucleic Acid) of an HIV (Human Immunodeficiency Virus). An isothermal amplification reagent is placed in the kit and contains an aqueous solution of primers LTR-F3, LTR-B3, LTR-FIP and LTR-BIP, an aqueous solution of MgCl2, an aqueous solution of dNTP, a 10*betaine buffer, a 20*SYBR dye, a BstDNA polymerase and 3.9 microliters of sterile water for injection. According to the kit, after a loop-mediated isothermal amplification reaction system is successfully synthesized, the system is combined with a fluorescent dye, the SYBR Green I fluorescent dye is combined with amplified fragments along with the amplification, the fluorescence intensity is recorded by a fluorescent quantitative PCR (Polymerase Chain Reaction) instrument, and finally, the virus content is given according to the fluorescence intensity.
Owner:杭州市儿童医院

Detection method of prawn IHHNV (infectious hypodermal and hematopoietic necrosis virus) and used nucleic acid isothermal amplification detection kit

The invention discloses a prawn IHHNV (infectious hypodermal and hematopoietic necrosis virus) nucleic acid isothermal amplification detection kit which comprises a grinding fluid tube containing a grinding fluid, a nucleic acid extracting solution tube A containing a sodium acetate solution, a nucleic acid extracting solution tube B containing absolute ethyl alcohol, a nucleic acid extracting solution tube C containing an alcohol solution with a mass concentration of 70 percent, a TE (tellurium) buffer solution tube containing a TE buffer solution, a UNG (uracil-DNA glycosidase) enzyme tube containing uracil DNA (deoxyribonucleic acid) glycosylase, an LAMP (Loop-mediated isothermal amplification) reaction liquid tube containing an LAMP reaction liquid, a BstDNA polymerase tube containing Bst DNA polymerase, a color-developing agent tube containing nucleic acid dye SYBR Green I, a positive control nucleic acid tube containing prawn IHHNV positive DNA and a negative control tube containing sterilizing double distilled water. The invention also provides a method for detecting the prawn IHHNV by utilizing the detection kit. The method has the characteristics of low cost, high detection sensitivity and easy site operation.
Owner:ZHEJIANG UNIV

Real-time fluorescence quantitative PCR (polymerase chain reaction) detection method of grass carp reovirus SYBR Green I

The invention provides a real-time fluorescence quantitative PCR detection method of grass carp reovirus SYBR Green I, at least comprising the following steps of: extracting the total RNA of the grass carp reovirus, designing a primer, carrying out RT-PCR (Reverse Transcription-Polymerase Chain Reaction) amplification on the coat protein gene of the grass carp reovirus, cloning and identifying the coat protein gene of the grass carp reovirus, diluting a standard template and establishing a fluorescence quantitative PCR standard curve. The detection method has low requirements on the concentration of the template and high detection sensitivity and can carry out quantitative analysis. The detection method can detect 72 samples at a time; a result can be observed immediately once the PCR reaction is finished without the operations of electrophoresis, dyeing and the like, and therefore, the detection method is more convenient and rapid than conventional RT-PCR methods.
Owner:YANGTZE RIVER FISHERIES RES INST CHINESE ACAD OF FISHERY SCI

Method for detecting bovine viral diarrhea viruses as well as preparation method and use method of reverse transcription loop-mediated isothermal amplification (RT-LAMP) reaction kit

The invention provides a method for detecting bovine viral diarrhea viruses as well as a preparation method and a use method of a reverse transcription loop-mediated isothermal amplification (RT-LAMP) reaction kit, relating to a preparation method and a use method of a reaction kit. The invention solves the problems that the traditional method for detecting bovine viral diarrhea viruses has expensive cost, needs professional equipment and professional staff to participate in detection, and is not suitable for the development state of the animal husbandry at the present stage of China. The preparation method comprises the following steps: firstly, designing a primer, preparing RT-LAMP reaction liquid, and then, finishing the preparation. The use method comprises the following steps: adding RNA extract containing bovine viral diarrhea virus samples into the reaction liquid, ungergoing RT-LAMP reaction after mixing, and then, centrifugally detecting; or adding 10,000*SYBR GREEN I, and putting below an ultraviolet lamp for detecting; or carrying out electrophoresis detection; or carrying out insulation reaction detection by adopting a Real-time PCR instrument. The reaction kit has convenient detection, does not need expensive instruments and reduces the cost.
Owner:NORTHEAST AGRICULTURAL UNIVERSITY

General detection method for pathogenic vibrios and nucleic acid isothermal amplification detection kit used in same

The invention discloses a general nucleic acid isothermal amplification detection kit for pathogenic vibrios of mariculture animals. The detection kit comprises a grinding liquid tube into which grinding liquid is filled, a nucleic acid extracting solution tube A into which solution of sodium acetate is filled, a nucleic acid extracting solution tube B into which absolute ethanol is filled, a nucleic acid extracting solution tube C into which 70 mass percent ethanol solution is filled, a tris-hydrogen chloride ethylene diamine tetraacetic acid (TE) buffer solution tube into which TE buffer solution is filled, a uracil-DNA-glycosylase (UNG) tube into which uracil-DNA-glycosylase is filled, a loop-mediated isothermal amplification (LAMP) reaction liquid tube into which LAMP reaction liquid is filled, a bacillus stearothermophilus deoxyribonucleic acid (Bst DNA) polymerase tube into which Bst DNA polymerase is filled, a color-developing agent tube into which a nucleic acid dye SYBR Green I is filled, a positive control nucleic acid tube into which positive DNA of the vibrios is filled and a negative control tube into which sterilized double distilled water is filled. The invention also discloses a method for detecting the pathogenic vibrios of the mariculture animals by utilizing the detection kit.
Owner:ZHEJIANG UNIV

Method for detecting expression of rice blast relevant gene in infected rice leaf tissue

The invention relates to a method for detecting the expression quantity of pathogenic genes of rice blast germs in infected rice leaf tissue. The invention provides the method for detecting the expression quantity of the pathogenic genes in different time points after rice is infected by the rice blast germs. The method adopts a technical proposal that the rice blast germs are inoculated on a rice leaf by spraying, sampling is performed and total RNA is extracted; real-time fluorescent quantitative PCR detection is performed on pathogenic genetic fragments of rice blast germs by an SYBR Green I embedded fluorescence method; the C(t) value of a sample to be detected is recorded; and the expression quantity of the related pathogenic genetic fragments is calculated according to the formula. The method can quickly and accurately detect the expression quantity of the pathogenic genes of the rice blast germs on different periods of time in the initial stage of inoculation of the rice blast germs, analyzes the expression quantity of different pathogenic genes in different rice cultivars and the variation of the different pathogenic genes on different periods of time after inoculation, and analyzes the spatiotemporal expression mode of the related pathogenic genes of the rice blast germs and so on. The method has accurate detection result and good repeatability, and is favorable for explaining the functions of the genes.
Owner:YUNNAN AGRICULTURAL UNIVERSITY

Loop isothermal amplification primer for quickly detecting tylenchulus semipenetrans and application of loop isothermal amplification primer

The invention discloses a loop isothermal amplification primer for quickly detecting tylenchulus semipenetrans and application of the loop isothermal amplification primer. The loop isothermal amplification primer comprises a primer pair TSF3 / TSB3 and a primer pair TSFIP / TSBIP, and the sequences of the primer pairs are shown as SEQ ID NO. 1 to 4 respectively. A loop isothermal amplification method is established through the loop isothermal amplification primer, loop isothermal amplification is performed through taking a sample DNA as a template, and results can be judged in two ways after the end of reaction, wherein the first way is that an amplification primer is subjected to electrophoresis, and a sample of a specific ladder-shaped strip, which occurs, is judged to be positive; the second way is that through adding SYBR green I into a reaction system, a sample of which the color is changed is observed with naked eyes to be positive. The loop isothermal amplification method is low in requirement for instruments and equipment, quick, safe, and high in specificity and sensitivity; a technical support is provided for the detection of the tylenchulus semipenetrans, in particular to the quick detection work of a grass-root quarantine unit for the tylenchulus semipenetrans, and the popularization and application values are very high.
Owner:SOUTH CHINA AGRI UNIV
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