The invention relates to a beneficial biological bacterium fermented microbial organic fertilizer to solve the problem of harms of organic wastes to the environment. The beneficial biological bacterium fermented microbial organic fertilizer is prepared through fermenting raw materials by beneficial biological bacteria, and the raw materials comprise, by weight, 10-15% of active humic acid, 3-9% of a nitrogenous fertilizer, 1.5-4.5% of a phosphate fertilizer, 1.5-4.5% of a potash fertilizer, 1-3% of a boron fertilizer, 0.5-1.5% of a silicon fertilizer, 0.3-0.7% of an iron fertilizer, 0.3-0.7% of a zinc fertilizer, 0.3-0.7% of a copper fertilizer, 0.2-0.4% of a magnesium fertilizer, 0.2-0.4% of a manganese fertilizer, 0.3-0.7% of a calcium fertilizer, 0.3-0.7% of a molybdenum fertilizer, 0.3-0.7% of a vanadium fertilizer, and the balance of an organic matter ferment material (metered by dry weight). The beneficial biological bacterium fermented microbial organic fertilizer has the advantages of low production cost, soil improvement, improvement of the quality of crop products, improvement of the output of the crops, promotion of development of the agriculture with Chinese characteristics, high harmless degree, absorption facilitation, slow synergism, yield and income increase, soil fertility raising, and balanced nutrition, and is helpful for naturally decomposing various beneficial components in soil after being applied in order to make the decomposed beneficial components be absorbed and utilized by plants.