The invention discloses a hybrid power energy management system of a trolley car and a control method. The system comprises a fuel cell array, a one-way isolation type DC-DC (direct current) converter in cascade connection with the fuel cell array on the basis of a full-bridge no-voltage no-current switch topological structure, a storage battery, a two-way isolation type DC-DC converter in cascade connection with the storage battery on the basis of a full-bridge no-voltage no-current switch topological structure, a supercapacitor, a two-way isolation type DC-DC converter in cascade connection with the supercapacitor on the basis of a full-bridge no-voltage no-current switch topological structure, an energy management unit based on a DSP (digital signal processor) controller, an interface extension unit based on an FPGA (field programmable gate array) controller, a voltage acquisition and conditioning circuit, a current acquisition and conditioning circuit, a weak current supply unit and a brake resistor. The system can supply energy to a load quickly, the response speed of the system to the load is increased, the brake power can be recovered as much as possible, the fuel availability is improved, the purpose of fuel economy is achieved, the service life of the storage battery is prolonged, and the cost is reduced.