The invention relates to the field of natural medicines, in particular to a preparation method of 6-shogaol extract and its medical application. Ginger supercritical fluid extract or dried ginger extract is extracted by heating reflux with ethanol-containing acid water, recovering ethanol, extracting the acid water solution with ethyl acetate, recovering ethyl acetate under reduced pressure to obtain a concentrate after extraction, and passing the concentrate through silica gel chromatography Column, gradient elution with petroleum ether and ethyl acetate, collecting the eluate and concentrating to obtain that, wherein the petroleum ether and ethyl acetate used for elution are eluted in six gradients, and the volume ratios are: 50:1, 33 :1, 25:1, 20:1, 17:1, 14:1, the 14:1 fractions were collected and concentrated. The preparation method of the present invention is easy to operate, the quality of the finished product is good, and the output is high. It only needs to be separated by silica gel column chromatography once after conversion to obtain the zingiberene phenolic composition, and the yield is very high, which can reach 60-65%, which is industrial production Bring great convenience.