The invention relates to a whole process tracking and tracing method and system thereof for quality safety of beef products, which belongs to digitization category of beef product quality safety. The invention adopts a 134.2 KHz electronic ear tag to mark individual cattle in beef cattle breeding period and a breeding management subroutine to record the situation of immunization, epidemic prevention and feeding diseases, in beef cattle breeding period; in butchering period, the system realizes the transformation from a breeding ear tag to a new ear tag; hooks on a butchering line are provided with 915M electronic labels, when weighing carcasses, number and types of inspection labels as well as 'new ear tag No.' are written on corresponding labels on hooks; when the carcasses are sent from an acid discharge storehouse to a cut line, the system realizes the transformation from the 915M electronic label to a bar code and automatically delivers data to an electric balance by a UDP protocol in wireless mode to realize the organic integration of management, control and production through printing program by an embedded bar code. The invention compactly combines software, hardware, the electronic label with low or high frequency, the bar code, and system management software to realize the seamless integration of production operation and marking management, thus greatly improving working efficiency.