The invention belongs to the technical field of feed additives, particularly relates to a method for preparing a feed additive containing antibacterial peptides, and provides the following scheme aiming at the problems proposed in the background technology: the method comprises the following steps: S1, taking materials; s2, crushing and stirring; s3, aerobic fermentation; s4, rejuvenating the strains; s5, strain fermentation; s6, pretreatment of fermentation liquor; s7, antibacterial peptide extraction; and S8, compounding the antibacterial peptide with a feed additive. Probiotic microorganisms are added in the strain fermentation process in the step S5, and a stabilizer is added in the fermentation liquor pretreatment in the step S6 to stabilize the fermentation liquor, so that the fermentation liquor is prevented from being decomposed, the activity is improved, and the content is increased; and finally, the prepared feed additive is combined, so that the prepared feed additive containing the antibacterial peptide is high in nutrient content, beneficial to improving the growth rate of animals, beneficial to promoting intestinal absorption of the animals and beneficial to enhancing physique and immunity.