The invention relates to a photovoltaic comprehensive application intelligent agricultural greenhouse system, including a photovoltaic power supply and energy storage module, an environmental parameter monitoring module, a water, fertilizer and pesticide automatic sprinkling irrigation module, a soil and microorganism regulation module, a sensing communication module, a comprehensive control terminal, a user experience module and a totally closed outer protection module; also including a photo-thermal storage module; or also including a natural wind simulation module; or also including a photo-thermal storage module, a thunder and lightning module, a growth promotion gas regulation module, a growth promotion music control module and a natural wind simulation module; or also including a photo-thermal storage module, a thunder and lightning module, a growth promotion gas regulation module, a growth promotion music control module, a natural wind simulation module, a biological pollination and environmental hormone control module, an insect pest natural energy introduction regulation module, and a precise picking and storage module. The photovoltaic comprehensive application intelligent agricultural greenhouse system has the advantages that the system can achieve the purpose of improving nutrition composition and taste while ensuring the yield, and in addition, is particularly suitable for popularization in barren land, mountain land, deserts and the like.