An endoscopic biopsy system comprising a means for drawing a sample to be sealed, separated, and / or collected towards an instrument, such as a structure that includes one or more of: an extendable wire, an extendable mast, an extruded tube with at least one opening and a vacuum therein, a pivot point, a hinge, and a mounting block. The system should have a means to transfer energy to a sample after a sample is grasped, such as a conducting wire or an anvil. The system should also have an airtight means to remove a separated sample from a biopsy site for analysis, such as a collection bag or an internal vacuum suction system. The endoscopic biopsy system can be used in a method of obtaining a biopsy from the thoracic cavity that includes a step of insufflating gas to induce pneumothorax and collapse a lung.