The invention provides a control method, equipment and a system for a railway passenger special line station interlocking machine. The control method for the railway passenger special line station interlocking machine comprises the following steps: an operator receives an abnormal station control mode control request which is transmitted by the station interlocking machine and has a station number, and directly transmits a control command to the station interlocking machine; and the operator transmits a response report which has the station number to a self-discipline machine, and is used for informing the self-discipline machine that the station interlocking machine which corresponds to the station number of the self-discipline machine is under the abnormal station control mode control. According to the control method, the equipment and the system for the railway passenger special line station interlocking machine provided by the invention, the corresponding signal equipment is controlled and displayed by taking the station as the unit, when some station goes wrong, the single station can be converted into the abnormal station control mode control, the influence on the whole region can be reduced, the work efficiency can be improved, and the automatic scheduling, adjusting and managing of the train can be preferably realized, so that the working strength of dispatchers and watchmen can be reduced, and the operating efficiency of passenger transport special lines can be optimized.