The invention relates to a microfluidic chip, particularly to a microfluidic chip for isoelectric focusing separation, which is provided with two substrates that are bonded in reversible or non-reversible way, wherein a micro-channel and an access hole are machined in one substrate; the access hole serves a liquid storage tank; the micro-channel is provided with an extracting area and an expanding area; a transitional connecting area is arranged between the extracting area and the expanding area; and the connecting area is provided with an inclination angle. Under the premise that the pH gradient is a set value, the cyclical variation of the width of the micro-channel is utilized to enable the electric field distribution in the micro-channel to regularly vary, so as to form the non-linear pH gradient, as a result, the protein samples with similar isoelectric points can be separated in higher resolution. The microfluidic chip has the characteristics that the microfluidic chip has small size, saves reagent, is quick to separate, is convenient for integration and automation, can machine thousands of repeated micro-structures once for all, has low cost, is simple and convenient to make and operate, has high efficiency, and has excellent effect and practical significance in the isoelectric focusing separation.