The invention relates to a
voltage-gating
sodium ion channel structure modeling method based on development
coupling analysis, and belongs to the field of
structural biology. The method includes the steps that through the rosetta membrane-
protein homology modeling method, a eukaryon
sodium ion channel NavPas (PDBid:5X0M)
tertiary structure serves as a template, and four
subunit structures of whicha Nav1.5 pore domain is composed are primarily established; through the development
coupling analysis (DCA) method, the contact ratio between actual residue pairs and interaction residue pairs obtained after forecasting through DCA in the structures is evaluated; combined with a scoring function, the structures with the high
score and the high contact ratio are selected as initiating structures of all structural domains; the four selected
subunit structures are assembled and optimized; a structure capable of having the high interface contact ratio and the high RosettaMP
score to meet the evaluation requirements is further selected from the optimized structures to serve as a final structure. According to the
voltage-gating
sodium ion channel structure modeling method based on development
coupling analysis, the defects that in a traditional structure modeling method, transmembrane area information is not fully considered, the homology of a template is low, and the forecasting accuracy is poor are overcome, and the reliability is high.