The invention discloses an expression cassette for recombinant expression of echinocandin B deacylase and an application thereof. The expression cassette comprises a promoter nucleic acid sequence, an RBS nucleic acid sequence, a nucleic acid sequence for coding an OmpA signal peptide, a nucleic acid sequence for coding a first lyotropic peptide, a nucleic acid sequence for coding an echinocandin B deacylase alpha subunit, a first termination codon, an RBS nucleic acid sequence, a nucleic acid sequence for coding an OmpA signal peptide , a nucleic acid sequence for encoding echinocandin B deacylase beta subunit, a nucleic acid sequence for encoding second solubilizing peptide, and second stop codon which are connected in sequence, wherein the amino acid sequence of the first solubilizing peptide is GEGEG, and and the amino acid sequence of the second solubilizing peptide is KKKKKK. The expression cassette can be used for expression to obtain the echinocandins B deacylase, the echinocandins B deacylase can be effectively and efficiently expressed by adding the two specific sequence dissolution promoting peptides, and the enzyme activity of thalli obtained through fermentation culture can reach 57.88 U / g after the thalli are broken.