A logistics distribution control method with soft time windows includes the following steps: (A1) a network model is built, cost resistances are assigned to roads to which network data are concentrated, and taking road nodes into consideration, toll weights are assigned to road traffic light intersections and toll stations; (A2) an optimized vehicle routing model with soft time windows (VRPTW) is built, a target function is established with lowest transportation costs, and the transportation costs are respectively composed of fixed distribution vehicle cost, transportation cost, vehicle waiting cost and delay cost; (A3) a fuzzy clustering analysis algorithm is designed, and a method based on the integration of quantitative analysis and qualitative analysis is adopted for clustering; (A4) a heuristic optimized vehicle routing algorithm is designed, the optimized vehicle routing algorithm is adopted for distribution target nodes in each class, and thereby a distribution result can be obtained. The logistics distribution control method with soft time windows adopts the distances of actual delivery road network routes between distribution nodes as a calculation basis and also takes the actual traffic capacities of roads, large network node number and transportation time needed by distribution nodes into consideration.