The invention discloses a nano-antibody capable of specifically combining HPVL6-E6 protein as well as a coding sequence, a preparation method and application thereof, an antibody VHH chain comprises aframework region and a complementarity determining region; the framework region comprises the following four amino acid sequences: FR1. SEQ ID NO: 1, FR2, SEQ ID NO: 3, FR3, SEQ ID NO: 5, FR4 and SEQID NO: 7; the complementarity determining region comprises the following three amino acid sequences: CDR1, SEQ ID NO: CDR2, SEQ ID NO: 4, CDR3, SEQ ID NO: 6. Compared with the prior art, the advantages are as follows: the nano-antibody capable of specifically binding to the HPV16-E6 protein has high specificity and high detection sensitivity; and the antibody can be efficiently expressed in escherichia coli, so that a foundation is provided for the mass production of a subsequent immune reagent and a tumor drug composition.