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Multiplex PCR kit for detecting 11 common food-borne pathogenic bacteria and application thereof

A food-borne pathogenic bacteria and kit technology, applied in recombinant DNA technology, microorganism-based methods, and microbial determination/inspection, etc. To reduce the incidence of food-borne diseases, control the spread of pathogenic microorganisms, and achieve the effects of accurate detection methods

Active Publication Date: 2019-11-29
SUZHOU UNIV
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

However, conventional PCR can only detect a single pathogen at a time. Therefore, on this basis, a series of technologies such as multiplex PCR, real-time fluorescent quantitative PCR, nested PCR, and digital PCR have been developed. Among them, multiplex PCR can be added to the reaction system. Multiple pairs of primers can simultaneously detect multiple target DNAs in one reaction tube, while the detection throughput of other PCR techniques is limited due to various reasons. Therefore, multiplex PCR technology has become the most promising method today and has been adopted Widely used in the detection of foodborne pathogens
[0004] For multiplex PCR, in theory, as long as the PCR reaction conditions are optimized, the number of primer pairs in the multiplex PCR reaction system can be continuously increased. Therefore, the actual detection throughput of multiplex PCR generally does not exceed 7 multiplex
In order to increase the detection throughput of multiplex PCR, experts at home and abroad have proposed a variety of solutions and made some progress, such as optimizing PCR reaction conditions, improving DNA polymerase activity, etc., or combining multiplex PCR technology with other technologies, such as microdroplets Digital PCR, gene chip, liquid phase suspension chip technology, etc., but these solutions have not fundamentally reduced the concentration of primers, reduced the interaction between primers or complicated operations, and are not easy to promote

Method used

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  • Multiplex PCR kit for detecting 11 common food-borne pathogenic bacteria and application thereof
  • Multiplex PCR kit for detecting 11 common food-borne pathogenic bacteria and application thereof
  • Multiplex PCR kit for detecting 11 common food-borne pathogenic bacteria and application thereof

Examples

Experimental program
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Effect test

Embodiment 1

[0060] Extraction of Bacterial Genomic DNA

[0061] Genomic DNA of each bacteria (11 species) was extracted according to the instructions of the Bacterial Genomic DNA Extraction Kit (Product No. DP209-02) from QIAgen, and the steps are as follows.

[0062] 1) Aspirate 1-5ml of bacterial culture solution, centrifuge at 10,000 rpm for 5 min, and discard the supernatant as much as possible.

[0063] 2) Add 200 μL buffer solution GA to the cell pellet, shake until the cell is completely suspended. (For Gram-positive bacteria that are difficult to break, the second step can be skipped, and lysozyme is added to break the wall. The specific method is to add 180 μL enzyme solution (20 mM Tris·HCl, pH 8.0; 2 mM EDTA; 1.2 % Triton; final concentration 20 mg / ml lysozyme;), 37 ℃ for more than 30min.)

[0064] 3) Add 20 μL of ProteinaseK solution to the tube and mix well.

[0065] 4) Add 220 μL buffer solution GB, shake for 15 seconds, place at 70°C for 15 minutes, the solution should b...

Embodiment 2

[0138] For 11 common food-borne pathogens in my country (Salmonella, Listeria monocytogenes, Shigella flexneri, Escherichia coli O157, Vibrio parahaemolyticus, Staphylococcus aureus, Vibrio cholerae bacteria, Clostridium botulinum type A, Bacillus cereus, Clostridium perfringens, Yersinia enterocolitica) designed and established a "public primer" mediated multiplex PCR detection system (Universal primers mediated multiplex PCR, UP-M-PCR system) for system sensitivity and specificity testing, as well as actual sample testing. The UP-M-PCR system includes the public primers of SEQ ID NO.1, the chimeric primers of Table 9 and conventional PCR components to form a PCR kit mediated by public primers for the detection of eleven kinds of food-borne pathogens.

[0139] Pathogen detection target gene is crucial to the whole technology, the conservation, accuracy and specificity of the target sequence are directly related to the accuracy and specificity of pathogen detection, the specific...

Embodiment 3

[0162] Practical application evaluation of the system

[0163] The UP-M-PCR system of the present invention was used to detect 100 strains of food-borne pathogenic bacteria collected from the Suzhou Center for Disease Control and Prevention. After the selected strains were resuscitated with LB solid medium, the colonies were drawn out with a disposable cotton swab and placed in 1ml sterile saline for mixing to extract the bacterial genomic DNA. At the same time, the present invention is used to detect 60 anal swab samples collected from the Center for Disease Control and 16 food sample enrichment liquids collected from Suzhou Food Inspection Institute. For standard primer verification, see Table 10 for specific primer sequences. At the same time, the positive amplification products were sent to Jinweizhi for sequencing to verify the reliability of the results. The amplification system during UP-M-PCR system amplification is shown in Table 13, the amount of each primer in the...

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Abstract

The invention discloses a common primer-mediated PCR kit for detecting 11 food-borne pathogenic bacteria and an application of the common primer-mediated PCR kit. A common primer-mediated multiplex PCR technology is utilized; specific genes of 11 common food-borne pathogenic bacteria (salmonella, listeria monocytogenes, shigella flexneri, enterohemorrhagic escherichia coli O157, vibrio parahaemolyticus, staphylococcus aureus, vibrio cholerae, clostridium botulinum A, bacillus cereus, clostridium perfringens and yersinia enterocolitica) are used as detection markers; an efficient, high-specificity and high-flux multiplex PCR detection system is established, and a nucleic acid detection kit suitable for detecting the common food-borne pathogenic bacteria is researched and developed. The sensitivity of the common primers reaches 10<3> copies / mu L, a UP-M-PCR system for simultaneously detecting the 11 food-borne pathogenic bacteria is constructed, single-template and two-template experiments prove that the UP-M-PCR system has good specificity, and the sensitivity of a bacterial genome DNA detection system is as high as 0.01 ng / mu L.

Description

technical field [0001] The invention belongs to the technical field of bacterial strain detection, in particular to the detection technology of food-borne pathogenic bacteria, more specifically to a PCR kit mediated by public primers for the detection of eleven kinds of food-borne pathogenic bacteria and its application. Background technique [0002] Foodborne diseases refer to diseases caused by pathogenic factors such as toxic and harmful substances (including biological pathogens) that enter the human body through ingestion. With the development of society and economy, foodborne diseases have increasingly become the focus of global public health, causing considerable morbidity and mortality every year, and causing a huge economic burden. In 2010, the World Health Organization estimated that there were about 2 billion cases of foodborne diseases, and even in industrialized countries, about 30% of people suffer from foodborne diseases every year. In England and Wales, abou...

Claims

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Application Information

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IPC IPC(8): C12Q1/689C12Q1/686C12Q1/10C12Q1/14C12Q1/04C12N15/11C12R1/42C12R1/19C12R1/63C12R1/445C12R1/085C12R1/01C12R1/145
CPCC12Q1/689C12Q1/686C12Q2600/16C12Q2537/143C12Q2565/125Y02A50/30
Inventor 孙万平陶静刘婉婉丁威
Owner SUZHOU UNIV
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