Mevalonate kinase gene in synthetic route of ginkgo terpene lactones, encoded protein and application thereof
A technology of ginkgo mevalonate kinase and mevalonate kinase, which is applied in application, genetic engineering, plant gene improvement, etc., and can solve the problem that there is no mevalonate kinase gene
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Embodiment 1
[0047] Example 1 Obtaining of Ginkgo Mevalonate Kinase Gene
[0048] Extraction of total RNA from Ginkgo biloba leaves
[0049] Take 1 g of fresh ginkgo leaves, freeze and grind them into powder with liquid nitrogen, and use the MiniBEST Plant RNAExtraction Kit (TaKaRa Company) to extract ginkgo RNA. For specific methods, refer to the kit instructions.
[0050] The quality of sample RNA was detected by a nucleic acid analyzer.
[0051] Ginkgo RNA reverse transcription to obtain cDNA
[0052] The prepared ginkgo RNA was reverse-transcribed to obtain cDNA;
[0053] The first strand cDNA was synthesized using the PrimeScriptTM 1st strand cDNA synthesis Kit kit from TAKaRa Company, and the method was referred to the instruction manual.
[0054] Cloning of Ginkgo Mevalonate Kinase Gene
[0055] Ginkgo mevalonate kinase gene-specific primers Amplification-F and Amplification-R were designed according to Ginkgo transcriptome data, and RT-PCR amplification reaction was carried out...
Embodiment 2
[0058] Example 2 Ginkgo mevalonate kinase protein sequence analysis
[0059] Transmembrane structure analysis found that there are transmembrane structures at positions 113-135 and 148-170 of the protein ( figure 1 ), Ginkgo mevalonate kinase protein has 61%-63% similarity with other species of plant mevalonate kinase protein, such as plum (similarity 62%, accession number XP_008246488.1), Yali (similarity 63%, accession number XP_009349394.1), jatropha (62% similarity, accession number XP_012089078.1), jujube (62% similarity, accession number XP_015875214.1), rubber tree (63% similarity, accession number AIO11226. 1).
[0060] The results of multiple alignment of protein sequences showed that Ginkgo mevalonate kinase protein has the functional structure of mevalonate synthase, and the monomer structure of Ginkgo mevalonate kinase protein includes ribosomal protein S5 2-type, GHMP kinase N-terminal , GHMP kinase C-terminal structure. Isoleucine at position 146 to alanine at...
Embodiment 3
[0061] Phylogenetic Analysis of Example 3 Ginkgo Mevalonate Kinase
[0062] In order to study the evolutionary relationship between Ginkgo mevalonate kinase and other biological mevalonate kinases, this study screened the mevalonate kinase proteins of bacteria, fungi, gymnosperms and angiosperms respectively from the NCBI database. The phylogenetic tree of mevalonate kinase was constructed by NJ method (Neighbor-Joining), and the bootstrap value was set as 1000.
[0063] Such as image 3 As shown, the mevalonate kinases of different species also evolved from a common ancestor. The halophilic archaea and the thermophilic archaea constituted the bacterial clade, followed by the fungal clade composed of Gibberella fujikura and Candida dunili, and Ginkgo biloba. The valonate kinase gene constitutes an independent gymnosperm clade and appears earlier than the angiosperm clade.
[0064] Biological information shows that the Ginkgo mevalonate kinase protein has GHMP kinase activity...
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