Glycosaminoglycan lyase and encoding gene and application thereof
A technology of glycosaminoglycans and coding genes, which is applied in the field of genetic engineering and achieves the effect of broad application prospects
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Embodiment 1
[0037] Embodiment 1, the acquisition of glycosaminoglycan lyase
[0038] Pick Vibrio sp. FC509 strain and inoculate it into 100mL of liquid medium, and culture it on a shaking table for 12 hours at a temperature of 28°C and a rotation speed of 200rpm, and add chondroitin sulfate to make the mass concentration reach 0.01%. The culture was continued for 48 hours; the culture medium was centrifuged to collect the supernatant medium, the supernatant was precipitated with ammonium sulfate with a final concentration of 80%, the precipitate was collected, and the precipitate was dialyzed with PBS buffer solution to remove ammonium sulfate to obtain glycosaminoglycan lyase.
[0039] The above-mentioned Vibrio sp. FC509 was deposited in the General Microbiology Center of the China Committee for the Collection of Microbial Cultures on March 12, 2014, with the preservation number CGMCC NO.8913, and address: No. 3, Yard No. 1, Beichen West Road, Chaoyang District, Beijing Institute of Mic...
Embodiment 2
[0043] Example 2, Extraction of Genomic DNA of Vibrio sp. FC509 Strain
[0044] Inoculate the Vibrio sp. FC509 strain into the liquid medium (same as Example 1), and culture it with shaking at 30°C and 200rpm to OD 600 =0.8; Take 40mL of the culture solution, centrifuge at 12,000rmp for 25min, collect the bacterial pellet, wash with 20mL of lysozyme buffer (10mM Tris-HCl pH8.0), centrifuge at 12,000rmp for 25min, collect the bacteria Body precipitation;
[0045] Add 12.0mL of lysozyme buffer solution to each tube to obtain about 14.0mL of bacterial solution in the above bacteria precipitation, add 560μL of lysozyme with a concentration of 20mg / mL respectively, and the final concentration is about 800μg / mL; after 1.0h in ice bath , incubate at 37°C for 2h until the solution is viscous; add 0.82mL of 10wt% SDS, 60μL of 100mg / mL proteinase K solution, bathe in water at 52°C for 1.0h; add Tris-balanced phenol / chloroform / isoamyl alcohol (volume ratio 25 :24:1) 15mL, gently invert...
Embodiment 3
[0046] Example 3 Genome scanning and sequence analysis of Vibrio sp. FC509 strain.
[0047] The large-molecular-weight genomic DNA prepared in Example 2 was sequenced (Meiji Biotechnology Co., Ltd.). The sequencing results were analyzed with the software on NCBI (National Center for Biotechnology Information, http: / / www.ncb1.nlm.nih.gov / ). The NCBI analysis software used is Open Reading Frame Finder (ORF Finder, http: / / www.ncb1.nlm.nih.gov / gorf / gorf.html) and Basic Local Alignment Search Tool (BLAST, http: / / blast. ncb1.nlm.nih.gov / Blast.cgi).
[0048] NCBI analysis results showed that Vibrio sp.FC509 strain genome carried a glycosaminoglycan lyase gene hcdase, the hcdase gene coding region was 2436bp long, and its nucleotide sequence was shown in SEQ ID NO.1. It has 49% identity with 384 amino acids of hyaluronate lyase gene in the whole genome sequence of Vibrio fischeri ES114 (NCBI accession number: YP_206952.1).
[0049] The glycosaminoglycan lyase HCDase encoded by the ...
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