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Method for extracting scylla paramamosain reovirus RNA (Ribose Nucleic Acid) at room temperature

A technology of reovirus and pseudo-cave crab, which is applied in the field of viral RNA extraction, can solve the problems of unfavorable operation, time-consuming, and increased research costs, and achieve the effect of short cycle, simple operation, and high-quality RNA

Inactive Publication Date: 2014-01-08
广西海洋研究所有限责任公司
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

The application of this harmful sampling method in the research not only increases the research cost, but also is not conducive to the early virus detection research of the parents in the breeding of mud crabs, and is not conducive to the protection and repeated utilization of wild resources of mud crabs.
Traditionally, the extraction of virus RNA from animal tissues is mostly carried out at low temperature. For example, the patent publication No. CN101220072A discloses a method for extracting viral genome RNA from animal tissues. After freezing and thawing, the diseased tissue is crushed, and the virus is collected by centrifugation at low temperature to separate the RNA. This method requires cumbersome sample collection and processing operations, requires centrifugation at low temperature, and requires removal of host cytoplasm, which is not conducive to easy operation and time-consuming

Method used

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  • Method for extracting scylla paramamosain reovirus RNA (Ribose Nucleic Acid) at room temperature
  • Method for extracting scylla paramamosain reovirus RNA (Ribose Nucleic Acid) at room temperature
  • Method for extracting scylla paramamosain reovirus RNA (Ribose Nucleic Acid) at room temperature

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0045] Viral RNA extraction

[0046] 1. Treatment of experimental supplies and preparation of medicines

[0047] (1) Handling of experimental supplies

[0048] The measuring cylinders, reagent bottles, tweezers and other glass utensils used in the experiment were baked continuously at 180°C for 10 hours; plastic centrifuge tubes and pipette tips were soaked in 0.1% DEPC water overnight and then sterilized at 120°C for 50 minutes; Materials related to isoelectrophoresis were soaked in hydrogen peroxide overnight.

[0049] (2) Experimental drug preparation

[0050] ACD anticoagulant: 82 mmol / L glucose, 23 mmol / L citric acid, 45 mmol / L sodium citrate

[0051] 75% Ethanol: Prepared with DEPC treated water

[0052] Chloroform:isoamyl alcohol (24:1)

[0053] 2. Acquisition of experimental materials

[0054] The blue crabs with typical "lethargy" and other symptoms of reovirus infection were selected as the research objects. Before sampling, soak the sick crabs with th...

Embodiment 2

[0065] Detection of RNA Quality by Amplification of Reovirus VP11 Region

[0066] 1. One-strand cDNA synthesis

[0067] Using the total RNA obtained in Example 1 as a template and the random primer N9 as a primer, reverse transcription was performed using reverse transcriptase from TaKaRa Company, and the first-strand cDNA was synthesized according to the instructions. The specific operations were as follows:

[0068] Prepare the reaction system according to the table below:

[0069]

[0070] After mixing the above reagents, place at 30°C for 10 min, react at 42°C for 2 h, keep at 95°C for 5 min, and briefly centrifuge to obtain the first strand of cDNA.

[0071] 2. Amplification of the VP11 region of the respiratory virus

[0072] The nested outer primers MCRVF (5'-TTCATTGGCATCCTGACTTT-3') and MCRVR (5'-TTCATTTGGTGAGC

[0073] CTTTGC-3'), the target fragment size is 433 bp, inner primers MCRVNF (5'-ACCTGATTATCGACCCAATCCCA-3') and MCRVR (5'-AGCCTTTGCCTGATGAGCCTGA...

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Abstract

The invention discloses a method for extracting a scylla paramamosain reovirus RNA (Ribose Nucleic Acid) at a room temperature. Quick and accurate detection of reovirus in the body of a blue crab has important practical significance on prediction and forecasting of virus diseases and disease control. The method can be used for quickly detecting the scylla paramamosain reovirus RNA, and comprises the following steps: (1) extracting blue crab blood lymph, and centrifuging to obtain blood cells for extracting the RNA; (2) adding Trizol and chloroform, violently shaking to mix evenly for 20 seconds and then standing for 3 minutes, centrifuging at the room temperature by 12000 rpm for 5 minutes and taking the supernate; (3) adding isopropanol of equal volume, evenly mixing at -20 DEG C and then placing for 20 minutes, centrifuging at the room temperature by 12000 rpm for 5 minutes and abandoning the supernate; and (4) adding 1 mL of 75% ethanol for washing and precipitation, centrifuging at the room temperature by 12000 rpm for 5 minutes and abandoning the supernate, drying in the air for 3-5 minutes at the room temperature, adding Rnase-freedd H2O for dissolving, and then putting the obtained product in a refrigerator for storage for future use. The method disclosed by the invention is simple to operate, less in steps and free of low-temperature condition; the extraction of little blood lymph has no damage on the organism of the blue crab; the method has a great significance in early detection of viruses.

Description

technical field [0001] The invention belongs to the technical field of virus RNA extraction, and in particular relates to a method for extracting virus RNA from the hemolymph of Scylla pseudomaculata, in particular to a method for extracting RNA of Scylla pseudomaculata reovirus at room temperature. Background technique [0002] Pseudomonas blue crab ( Scylla paramamosain ) commonly known as blue crab, is a dominant species of blue crab, widely distributed in the southeast coast of China, is a large edible seafood crab with high economic value, and is a traditional marine treasure in China. Due to the continuous expansion of breeding scale and breeding density, and the deteriorating breeding environment, large-scale epidemics have broken out in the blue crab breeding areas of the southeastern coastal provinces of China. Since 2008, in the process of breeding adult crabs, fattening crabs, and artificial seedlings, the blue crabs of pseudo-caves have died of unknown reasons. ...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12N15/10C12R1/91
Inventor 彭银辉蔡小辉王志成梁志辉黄国强
Owner 广西海洋研究所有限责任公司
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