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Fluorescent quantitative PCR (Polymerase Chain Reaction) detection kit and detection method of various viruses of donor corneas

A detection kit and donor technology, which is applied in the field of molecular biology detection of corneal virus infection in donors, can solve the problems of PCR false positive pollution, ordinary PCR false positive pollution, and difficulty in improving quantitative accuracy, and achieve quantitative accuracy High, to avoid the effect of cross-contamination

Active Publication Date: 2010-10-06
SHANDONG EYE INST
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

Although the polymerase chain reaction (PCR) technology has been widely used in nucleic acid analysis, the false positive pollution and quantitative accuracy of ordinary PCR have always troubled people.
It relies on the post-processing of various types of PCR, and these processing processes can easily cause a large number of PCR products to fly into the air, making the false positive contamination of PCR the biggest problem in large-scale clinical applications
On the other hand, the quantification of all these methods is carried out for the final product of PCR, and the platform effect of PCR greatly interferes with the correlation between the number of original templates of PCR and the final product, making it difficult to improve the quantitative accuracy

Method used

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  • Fluorescent quantitative PCR (Polymerase Chain Reaction) detection kit and detection method of various viruses of donor corneas
  • Fluorescent quantitative PCR (Polymerase Chain Reaction) detection kit and detection method of various viruses of donor corneas

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0059] Example 1 Donor corneal HCV virus detection:

[0060] 1. Extraction of total RNA from the conjunctival tissue of the donor eye and construction of a positive working standard:

[0061] (1) Take 5 mg of donor eyeball conjunctival tissue, put the tissue block into a centrifuge tube, add 350 μL Trizol, and fully homogenize with an electric homogenizer for 1-2 minutes. Place at room temperature for 5 minutes to fully lyse;

[0062] (2) Put the tissue lysate into the filter column and centrifuge at 12000rpm for 1min. Discard the filter column, add 350 μL of 70% ethanol to the filtrate, and repeatedly pipette 5 times to mix;

[0063] (3) Add the sample to the adsorption column and centrifuge at 12000rpm for 30s. Replace with a new filtrate collection tube, add 350 μL filter membrane desalting solution, and centrifuge at 12000 rpm for 1 min;

[0064] (4) Add 95 μL DNase reaction solution and let stand at room temperature for 5 minutes. Add 200 μL of eluent 2 and centrifug...

Embodiment 2

[0081] Example 2 Donor corneal HIV1 virus detection:

[0082] 1. Extraction of total RNA from the conjunctival tissue of the donor eye and construction of a positive working standard: the specific steps are the same as the extraction of total RNA from the conjunctival tissue of the donor eye in Example 1.

[0083] A plasmid (pUC57-HIV1) containing the HIV1 gene was constructed as a positive working standard. The positive working standard contains the target sequence amplified by the forward and reverse primers of HIV1. In addition, a sequence is added on both sides of the target sequence to make it closer to the structure of the actual test sample, so as to ensure the consistency with the actual test sample. Consistency of amplification efficiency.

[0084] Using the Promega PureYield plasmid miniprep system kit, extract the HIV1 positive working standard plasmid, and use a UV spectrophotometer to compare the color at 260nm and 280nm to obtain the purity and concentration of ...

Embodiment 3

[0097] Example 3 Donor corneal RV virus detection:

[0098] 1. Extraction of total RNA from the conjunctival tissue of the donor eye and construction of a positive working standard: the specific steps are the same as the extraction of total RNA from the conjunctival tissue of the donor eye in Example 1.

[0099] A plasmid (pUC57-RV) containing the RV gene was constructed as a positive working standard. Each positive working standard contains the target sequence amplified by RV forward and reverse primers. In addition, a sequence is added on both sides of the target sequence to make it closer to the structure of the actual detection sample to ensure that it is consistent with the actual detection sample. The consistency of the amplification efficiency among them.

[0100] Use the Promega PureYield plasmid miniprep system kit to extract the RV positive working standard plasmid, and use a UV spectrophotometer to compare colors at 260nm and 280nm to obtain the purity and concentr...

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Abstract

The invention relates to a fluorescent quantitative PCR detection kit and a detection method of various viruses of donor corneas. The kit comprises an RNA (Ribonucleic Acid) extraction reagent, an RNA reverse transcription and amplification reagent and positive working standards, wherein the RNA reverse transcription (RT) and amplification reagent comprises a 2X RT-PCR premix reagent, polymerases, reverse transcriptases, forward and reverse HCV (hepatitis C virus) primers, an HIV1 (human immunodeficiency virus 1) primer, an RV (rubella virus) primer, HCV, HIV1 and RV fluorescent probes and HCV, HIV1 and RV negative and positive control; the positive working standards are pUC57-HCV plasmids containing destination sequences amplified by the HCV forward and positive primers and pUC57-HIV1 plasmids containing destination sequences amplified by the HIV1 forward and positive primers respectively. The invention realizes the complete closed-tube detection on donor conjunctiva tissue specimens and does not need PCR aftertreatment, and thereby, cross contamination is avoided; meanwhile, real-time detection is adopted and an obtained Ct value and the original template number are completely in linear correlation; the quantitative accuracy rate is extremely high, and the relative error is about 50 percent, and thereby, the invention is enough to adapt to the demands of clinical nucleic acid quantification.

Description

technical field [0001] The invention belongs to the field of detection of donor corneal virus infection by molecular biology techniques, in particular to the rapid detection of severe disease viruses hepatitis C virus (HCV), human immunodeficiency virus type I (HIV1) and rabies virus (RV) in the donor cornea Kits and detection methods. Background technique [0002] The biological safety of eye banks in my country is extremely poor, and the problem of iatrogenic infection of donor corneas has not been controlled. The main reason is that most of the eye bank donors have incomplete information on the general conditions of the donors. Donors who died unexpectedly did not even have medical information on the general conditions, and there is a great risk of infecting various types of hepatitis, rabies and AIDS. In the case of shortage, the clinical use of the donor cornea should be maximized on the premise of ensuring safety. At present, the main problem for eye banks in my coun...

Claims

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Application Information

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IPC IPC(8): C12Q1/70C12Q1/68G01N21/64
Inventor 谢立信陈鹏
Owner SHANDONG EYE INST
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