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Efficient preparation method of intermediate of heterocyclic drugs

A technology of heterocycles and intermediates, which is applied in the field of biocatalysis, can solve the problems of increased production cost, unfavorable scale-up production and high production cost due to catalyst addition, and achieves the effect of reducing the product inhibition effect.

Active Publication Date: 2020-02-11
JIANGNAN UNIV
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  • Abstract
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  • Claims
  • Application Information

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Problems solved by technology

[0013] (11) Patent CN201310173088.2 discloses a method of using recombinant ketoreductase (KRED) enzyme powder to asymmetrically reduce N-B OC -3-piperidone, but did not disclose the gene sequence or amino acid sequence of ketone reductase (KRED)
Patent CN201310054684.9 discloses an asymmetric synthesis of (S)-1-tert-butoxycarbonyl-3-hydroxypiperidine using alcohol dehydrogenase PAR, but the organic reagent isopropanol is used for the coenzyme cycle, and the organic reagent There is a greater degree of damage to the enzyme activity, and it has obvious inhibitory effect
Patent CN201610132936.9 discloses a method using carbonyl reductase R E The CR enzyme asymmetrically reduces ketoreductase (KRED), but this enzyme requires N I -NTA purification, and it uses 2-octanol-water two-phase reaction, which is not conducive to large-scale production or relatively high production cost
Pichia pastoris P reported in patent CN108220358A ICHIA SP.SIT2014 can be used as a biocatalyst for preparing (S)-NBHP, but too much catalyst addition increases the production cost
CN10822061A reports that ketoreductase MT-KRED is used for preparing (S)-NBHP, but needs to add expensive coenzyme in reaction process
[0014] Although the ketoreductase reported above can be used to prepare (S)-NBHP, the reaction process requires the addition of expensive coenzyme, a large amount of enzyme and organic solvents, which is not conducive to the scale-up application in the actual industry.

Method used

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  • Efficient preparation method of intermediate of heterocyclic drugs
  • Efficient preparation method of intermediate of heterocyclic drugs
  • Efficient preparation method of intermediate of heterocyclic drugs

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0043] Rational mutation and mutant construction of key amino acids of alcohol dehydrogenase KpADH include the following steps:

[0044] 1. Identify key amino acids that control stereoselectivity and catalytic activity

[0045] Through the crystal structure (PDB: 5Z2X) derived from Kluyveromyces alcohol dehydrogenase KpADH, find out the amino acid that interacts with the substrate NBPO; through the conservative analysis of amino acid sequence alignment with more than 30% homology, screen out Key amino acid residue 127.

[0046] 2. Construction of Mutants

[0047] Using the pET28a-KpADH recombinant plasmid preserved in the laboratory as a template (recorded in the patent application with publication number CN105936909A), the 127th amino acid of the alcohol dehydrogenase KpADH with amino acid sequence such as SEQ ID No.1 was carried out by using the whole plasmid PCR method Site-directed saturation mutagenesis. The mutants Y127A, Y127C, Y127F, Y127I, Y127M, Y127Q, Y127V, Y127...

Embodiment 2

[0049] According to Example 1, the mutants with improved catalytic activity were induced, expressed, purified and kinetically determined, including the following steps:

[0050] 1. Induced expression

[0051] The mutant in Example 1 was inoculated into 50 μL / mL LB medium, and cultured with shaking at 37° C. and 180 rpm. When OD600 reached 0.8, isopropyl-β-D-thiogalactopyranoside (IPTG, 0.2M) was added to a final concentration of 0.2mM, and the temperature was lowered to 25°C to induce protein expression. At the end of the culture, cells were harvested by centrifugation and sonicated in PBS buffer (pH 7.4). The cell lysate was centrifuged at 8000rpm for 30min.

[0052] 2. Protein purification

[0053] Nickel column affinity chromatography is used. According to the His-Tag tag at the N-terminal of KpADH, it can competitively bind with nickel, and gradient or linear elution methods can be used. KpADH and its mutants could be completely eluted when the imidazole concentration ...

Embodiment 3

[0061] In order to explore the heterocyclic ketone substrate spectrum of KpADH and its mutants, the heterocyclic ketones dihydro-3(2H)-furanone, tetrahydrothiophen-3-one, cyclohexanone, 4-ethylcyclohexanone, N -Boc-3-pyrrolidone, N-Boc-2-piperidone, N-Boc-3-piperidone, N-Boc-4-piperidone were used to determine the substrate kinetics of KpADH and mutants to heterocyclic ketones study. As shown in Table 2, except for the N-Boc-2-piperidone substrate in the ortho position, it exhibits catalytic activity for other substrates. Mutant Y127W in the substrate spectrum, the k of the substrate N-Boc-3-pyrrolidone cat / K m from 0.2s -1 mM -1 increased to 2.1s -1 mM -1 , and the k for substrate 7a cat / K m from 3.6s -1 mM -1 increased to 31.0s -1 mM -1. At the same time, the e.e. values ​​for the two substrates were also increased to over 99%. This indicated that the mutant Y127W specifically increased the catalytic efficiency of substrates with a Boc group and a carbonyl gr...

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Abstract

The invention discloses an efficient preparation method of an intermediate of heterocyclic drugs. According to the efficient preparation method of the intermediate of the heterocyclic drugs, the intermediate of the heterocyclic drugs are produced by catalyzing a heterocyclic substrate by coupling an alcohol dehydrogenase mutant and glucose dehydrogenase; and the alcohol dehydrogenase mutant is prepared by mutating tyrosine at position 127 of a alcohol dehydrogenase female-parent with an amino acid sequence shown as SEQ ID No. 2 into tryptophan. The alcohol dehydrogenase mutant, namely mutant Y127W, utilized in the efficient preparation method of the intermediate of the heterocyclic drugs is capable of reducing product inhibition effects in a single aqueous system without addition of any co-solvent, thereby achieving a conversion rate higher than 99% within 12 hours. Being coupled with the glucose dehydrogenase (BmGDH), the mutant Y127W is capable of realizing gram-level preparation ata scale of 50 ml in a single aqueous system without addition of any exogenous coenzyme or organic co-solvent when substrate concentration is up to 600g x L<-1>; and the catalyst loading capacity is 3.3%. As for a final product, namely (S)-NBHP, the e.e. value is up to 99.4%; the space-time yield is about 1400g x L<-1> x d<-1>; and the product purity is 99.58%.

Description

technical field [0001] The invention relates to a high-efficiency preparation method of a heterocyclic drug intermediate, belonging to the technical field of biocatalysis. Background technique [0002] (S)-N-B OC -3-Hydroxypiperidine [(S)-NBHP] is a key chiral intermediate in the synthesis of the drug Ibrutinib (IBRUTINIB) for the treatment of lymphoma. The method of biosynthesis of (S)-NBHP is more green and environment-friendly, thus attracting more and more attention. However, previous studies have shown that the biosynthesis of (S)-NBHP requires the addition of organic co-solvents and expensive coenzymes, and the high concentration of substrates will lead to substrate or product inhibition, which will increase the cost of (S)-NBHP synthesis. [0003] (1) 2009A CHERETZ et al., used the method of biocatalytic synthesis for the first time, using the reductase in carrot cubes for catalysis. The catalyst was cheap and environmentally friendly, and provided a new idea for t...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12N9/04C12P17/12
CPCC12N9/0006C12P17/12C12Y101/01001
Inventor 倪晔吴彦霏周婕妤许国超韩瑞枝
Owner JIANGNAN UNIV
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