Fish pike fry rhabdovirus nested PCR detection primer group, kit and method and application
A rhabdovirus and detection method technology, applied in the field of molecular biology, can solve the problems of high false positive, specificity, low sensitivity, physical decline, etc., and achieve the effect of strong specificity and high sensitivity
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Embodiment 1
[0029] The establishment of embodiment 1 nested PCR detection method
[0030] 1. Experimental materials: The diseased fish samples were collected from the hybrid snakehead farm in Shunde City, Guangdong Province, and stored in the laboratory at -80°C.
[0031] Experimental reagents: TRIpure Reagent (Beijing Aidelai Biology); isopropanol, chloroform, 75% ethanol (Sinopharm Chemical Reagent Factory); DEPC water (Biosharp company product); Premix Taq (TaKaRa Version 2.0plusdye), reverse Transcriptase, DL2000 DNA Marker (product of TaKaRa Company); DNA Gel Recovery Kit (produced by Quanshijin Company); agarose (Biowest Agarose); 50×TAE buffer.
[0032] 2. Primer design and synthesis
[0033] According to the gene sequence related to snakehead vesicular virus published by NCBI (National Center for Biotechnology), using Clone Manager software, according to the conserved sequence of the nucleocapsid protein gene of snakehead vesicular virus. The primer design software (Primer prime...
Embodiment 2
[0045] Evaluation of embodiment 2 nested PCR method
[0046] 1. Specific detection
[0047] The DNA or cDNA of snakehead vesicular virus (SHVV), red sea bream iridescent virus (RSIV), infectious spleen and kidney necrosis virus (ISKNV), and carp spring viremia virus (SVCV) were respectively used as detection templates, and ddH 2 O is a negative control, which is detected according to the nested PCR detection method established by the present invention. The results showed that SHVV was positive, and a 397bp single target band was amplified. The experimental control samples RSIV, ISKNV, SVCV and ddH 2 O, no bands, negative (see figure 2 ).
[0048] 2. Sensitivity testing
[0049] pair 1×10 4 TCID 50 / mL virus solution was diluted 10 times (10 0 , 10 -1 , 10 -2 , 10 -3 , 10 -4 , 10 -5 , 10 -6 , 10 -7 , 10 -8 ), extract RNA according to the detection method established by the present invention, and synthesize cDNA. Using this as a PCR template, nested PCR amplific...
Embodiment 3
[0050] Embodiment 3 clinical sample detection
[0051] Select 16 clinical samples of diseased hybrid snakehead kidney tissue and set ddH 2 O is a negative control, which is detected according to the nested PCR detection method established by the present invention. The results showed that 13 samples amplified specific bands and were positive; 3 clinical samples and the negative control ddH 2 O No band, negative (see Figure 4 ). The positive band gel was recovered and sequenced, and the gene sequence of the positive sample was consistent with the gene sequence of snakehead vesicular virus (SHVV) published by NCBI.
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