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Fish pike fry rhabdovirus nested PCR detection primer group, kit and method and application

A rhabdovirus and detection method technology, applied in the field of molecular biology, can solve the problems of high false positive, specificity, low sensitivity, physical decline, etc., and achieve the effect of strong specificity and high sensitivity

Inactive Publication Date: 2019-12-24
YANGZHOU UNIV
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

In recent years, the virus has caused great harm to some aquaculture areas. In some artificially cultured ponds, the diseased fish had no obvious symptoms at the initial stage of infection, and their food intake was weakened and their physical fitness declined. Protruding, floating on the edge of the pool, sometimes rolling over, and soon died, there is no effective treatment
There is currently no special literature and technology for the identification of this virus, and ordinary PCR is generally used for detection, which has low specificity and sensitivity and a high probability of false positives

Method used

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  • Fish pike fry rhabdovirus nested PCR detection primer group, kit and method and application
  • Fish pike fry rhabdovirus nested PCR detection primer group, kit and method and application
  • Fish pike fry rhabdovirus nested PCR detection primer group, kit and method and application

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Embodiment 1

[0029] The establishment of embodiment 1 nested PCR detection method

[0030] 1. Experimental materials: The diseased fish samples were collected from the hybrid snakehead farm in Shunde City, Guangdong Province, and stored in the laboratory at -80°C.

[0031] Experimental reagents: TRIpure Reagent (Beijing Aidelai Biology); isopropanol, chloroform, 75% ethanol (Sinopharm Chemical Reagent Factory); DEPC water (Biosharp company product); Premix Taq (TaKaRa Version 2.0plusdye), reverse Transcriptase, DL2000 DNA Marker (product of TaKaRa Company); DNA Gel Recovery Kit (produced by Quanshijin Company); agarose (Biowest Agarose); 50×TAE buffer.

[0032] 2. Primer design and synthesis

[0033] According to the gene sequence related to snakehead vesicular virus published by NCBI (National Center for Biotechnology), using Clone Manager software, according to the conserved sequence of the nucleocapsid protein gene of snakehead vesicular virus. The primer design software (Primer prime...

Embodiment 2

[0045] Evaluation of embodiment 2 nested PCR method

[0046] 1. Specific detection

[0047] The DNA or cDNA of snakehead vesicular virus (SHVV), red sea bream iridescent virus (RSIV), infectious spleen and kidney necrosis virus (ISKNV), and carp spring viremia virus (SVCV) were respectively used as detection templates, and ddH 2 O is a negative control, which is detected according to the nested PCR detection method established by the present invention. The results showed that SHVV was positive, and a 397bp single target band was amplified. The experimental control samples RSIV, ISKNV, SVCV and ddH 2 O, no bands, negative (see figure 2 ).

[0048] 2. Sensitivity testing

[0049] pair 1×10 4 TCID 50 / mL virus solution was diluted 10 times (10 0 , 10 -1 , 10 -2 , 10 -3 , 10 -4 , 10 -5 , 10 -6 , 10 -7 , 10 -8 ), extract RNA according to the detection method established by the present invention, and synthesize cDNA. Using this as a PCR template, nested PCR amplific...

Embodiment 3

[0050] Embodiment 3 clinical sample detection

[0051] Select 16 clinical samples of diseased hybrid snakehead kidney tissue and set ddH 2 O is a negative control, which is detected according to the nested PCR detection method established by the present invention. The results showed that 13 samples amplified specific bands and were positive; 3 clinical samples and the negative control ddH 2 O No band, negative (see Figure 4 ). The positive band gel was recovered and sequenced, and the gene sequence of the positive sample was consistent with the gene sequence of snakehead vesicular virus (SHVV) published by NCBI.

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Abstract

The invention relates to a fish pike fry rhabdovirus nested PCR detection primer group, kit and method and application, and belongs to the technical field of molecular biology. The fish pike fry rhabdovirus nested PCR detection method comprises the steps that total RNA of a sample to be detected is used as a template, a reverse transcription reaction is carried out, and cDNA of the sample to be detected is obtained; the cDNA of the sample to be detected is used as a template to perform a first round PCR amplified reaction; then a first round PCR amplified product is used as a template to perform a second round PCR amplified reaction; and a second round PCR amplified product is subjected to agarose gel electrophoresis, gel is placed into an imaging system for observing whether a positive amplification stripe appears or not, and whether the sample to be detected contains fish pike fry rhabdovirus or not is judged. The fish pike fry rhabdovirus nested PCR detection method has the characteristics of high sensitivity and high specificity, and fish pike fry rhabdovirus-snakehead vesicular stomatitis virus can be rapidly and accurately detected.

Description

technical field [0001] The invention relates to a primer set, a kit, a detection method and an application for fish rhabdovirus nested PCR detection, and belongs to the technical field of molecular biology. Background technique [0002] PCR stands for Polymerase Chain Reaction technique, a process similar to DNA replication in reference cells. This technology uses DNA as a template, adding PCR enzymes and corresponding specific primers to perform programmed reactions in a PCR instrument, and copy and amplify to generate new complementary DNA fragments. The process consists of three steps: denaturation-annealing-extension. After multiple cycles, DNA amplification can be amplified millions of times within 2-3 hours. Because of its advantages of high amplification efficiency, strong specificity and high sensitivity, it has been widely used in the field of molecular biology research. [0003] Nested PCR is an improved solution based on the common PCR method. The difference fro...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/70C12Q1/6848C12N15/11
CPCC12Q1/6848C12Q1/701C12Q2549/119C12Q2565/125
Inventor 刘晓丹张晓君曹攀肖自东孙威
Owner YANGZHOU UNIV
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