Gene chip for detecting important pathogenic bacteria in aquatic product and kit thereof
A technology of gene chips and aquatic products, applied in the field of gene chips and kits for detecting important pathogenic bacteria in aquatic products, can solve the problems of complex operation, long inspection cycle, heavy manual labor, etc., achieve strong repeatability, The effect of high accuracy and easy operation
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Embodiment 1
[0036] Design and preparation of embodiment 1 probe
[0037] 1. Sequence acquisition:
[0038] (1) Acquisition of bacterial 16S rDNA sequences: twelve species of bacteria (Proteus mirabilis, Proteus vulgaris, Salmonella, Vibrio parahaemolyticus, Vibrio cholerae, Listeria monocytogenes, Staphylococcus aureus) were downloaded from the GenBank public database. coccus, Streptococcus pyogenes, Vibrio vulnificus, Bacillus cereus group, Shigella, Yersinia enterocolitica) all 16S rDNA sequences.
[0039] (2) Acquisition of 16S-23S rDNA interregional sequences: all 16S-23S rDNA interregional sequences of Proteus mirabilis, Proteus vulgaris and their relatives were downloaded from the GenBank public database.
[0040] (3) Acquisition of ipaH gene sequences: all ipaH gene sequences of the four species of Shigella were downloaded from the GenBank public database.
[0041] (4) Acquisition of the invA gene sequence: the entire invA gene sequence of Salmonella was downloaded from the Gen...
Embodiment 2
[0059] Design and preparation of embodiment 2 primers
[0060] 1. Sequence acquisition: the same as the sequence of the designed probe.
[0061] 2. Design primers:
[0062] (1) Design of primers for amplifying the interregional sequence: After comparing the 16S rDNA of twelve species of bacteria downloaded from the public database NCBI with the sequence alignment software Glustal X, a 16S rDNA conservative sequence close to the interregional region was selected as the upstream Primers, lengths conforming to T m Value 50°C±5°C, length 17bp±2bp, Hairpin: NONE, Dimer: NONE, False Priming: NONE, CrossDimer: NONE, and contains bacterial universal probe sequence.
[0063] (2) Design of primers for amplifying specific gene sequences: compare the above-mentioned specific gene sequences of ten species of bacteria except Proteus mirabilis and Proteus vulgaris downloaded from the GenBank public database with the sequence comparison software Glustal X, Find the conserved segment of t...
Embodiment 3
[0069] Example 3 Gene Chip Preparation——Chip Spotting
[0070] 1. Dissolving probes: the probes synthesized in Example 1 were respectively dissolved in 50% DMSO solution, and diluted so that the final concentration of the probes reached 1 μg / μl.
[0071] 2. Adding plate: Add the dissolved probe to the corresponding position of the 384-well plate, 10 μl per well.
[0072] 3. Spotting: as figure 1 The shown 57.5mm × 25.5mm × 1mm (length × width × height) clean aldehyde slide (CapitalBio Corp., China) was placed on the stage of the chip spotter (Spotarray 72), using SpotArray control software (Telechem smp3 stealty pin), run the program, press figure 2 The arrangement shown is spotted on the aldehydeized glass slide in the spotting area of 4.5 mm×4.5 mm to form a medium-low density DNA micro-array, and the array arrangement rules in the six dot matrix areas on the glass slide are the same. The size of the dot matrix area is 3mm×2mm, the dot pitch in the dot matrix is 250μ...
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