ssDNA aptamer capable of specifically recognizing N-acetylneuraminic acid and application thereof
A technology of acetylneuraminic acid and aptamer, which is applied in the direction of recombinant DNA technology, DNA/RNA fragments, fluorescence/phosphorescence, etc., can solve the problems of limiting the application of immunoassay methods, limited types of enzyme-labeled antibodies, production and application restrictions, etc. , to achieve the effect of high affinity, easy modification and labeling, and low cost
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Embodiment 1
[0029] (1) Construction of random ssDNA library and its primers:
[0030] (a) Construct a random ssDNA library with a length of 79 bases
[0031] 5'-TAGGGAATTC GTCGACGGAT CC-N35-CTGCAGGTCG ACGCATGCGC CG-3', wherein N represents any one of the bases A, T, C, and G.
[0032] (b) Synthetic forward primer
[0033] Forward primer 1: 5′-TAGGGAATTC GTCGACGGAT-3′;
[0034] Forward primer 2: 5′-FAM-TAGGGAATTC GTCGACGGAT-3′;
[0035] (c) Synthetic reverse primer
[0036] Reverse primer 1: 5'-CGGCGCATGC GTCGACCTG-3';
[0037] Reverse primer 2: 5'-biotin-CGGCGCATGCGTCGACCTG-3'.
[0038] (2) In vitro screening of nucleic acid aptamers:
[0039] In order to screen out ssDNA aptamers with high affinity and specificity to Neu5Ac, a total of 10 rounds of nucleic acid aptamer screening were carried out.
[0040] (a) The 25 μL PCR amplification system is shown in Table 1.
[0041] Table 1 Substances and dosages of 25 μL PCR amplification system
[0042] raw material concentr...
Embodiment 2
[0052] Determination of dissociation constant K of aptamer sequence by fluorescence method d value
[0053] The stability and secondary structure of multiple aptamer sequences obtained in Example 1 were analyzed by Mfold online software. Add different concentrations of aptamer sequences modified with the fluorescent group 6-carboxyfluorescein (FAM) to the binding buffer, and supplement the volume with binding buffer to 200 μL, denature at 90°C for 10 minutes, rapidly ice-bath for 10 minutes, and place at room temperature 10min. Then add 10 μmol Neu5Ac into the solution, shake slightly, react at room temperature for 2 hours, then add graphene oxide, incubate at room temperature for 2 hours, and mix the solution at 13000r·min -1 Centrifuge for 5 minutes and take the supernatant. Finally, all the supernatant was added to a 96-well plate to measure its fluorescence intensity with a microplate reader. The content of the aptamer sequence is proportional to the fluorescence inten...
Embodiment 3
[0057] Specific results of detection of ssDNA aptamer sequence ap1 by fluorescence method
[0058] Add 200 μL of binding buffer to the aptamer api of the same concentration modified by the fluorescent group 6-carboxyfluorescein (FAM), denature at 90°C for 10 minutes, rapidly ice-bath for 10 minutes, and place at room temperature for 10 minutes. Then add 1 μmol of Neu5Ac, N-glycolylneuraminic acid (Neu5Gc), urosonic acid (KDN), glucose, sucrose, and maltose solution into the solution, shake slightly, react at room temperature for 2 hours, and then add graphite oxide ene, incubated at room temperature for 2h, and the mixture was heated at 13000r·min -1 Centrifuge for 5 minutes and take the supernatant. Finally, all the supernatant was added to a 96-well plate to measure its fluorescence intensity with a microplate reader.
[0059] Specific test results such as image 3 As shown, in the presence of Neu5Ac, the detected fluorescence intensity is significantly higher than that o...
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