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LAMP (Loop-Mediated Isothermal Amplification) primer group, micro-fluidic chip and kit for detecting reproductive tract pathogenic microorganisms

A microfluidic chip, a technology of pathogenic microorganisms, applied in the field of reproductive tract infection detection, can solve the problems of being infected, difficult to detect bacteria, and high requirements, and achieve the effects of rapid and accurate detection, short detection time, and high sensitivity

Active Publication Date: 2020-07-28
TIANJIN CHASE SUN PHARM CO LTD
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

The culture method itself has many defects and cannot meet the clinical needs
First of all, the culture method takes a long time to detect, and the culture time is related to the type of bacteria infected. It takes at least 2-3 days. When an acute disease occurs clinically, the culture method cannot be applied; secondly, the culture method has low accuracy, especially for batch identification. It is easy to infect each other; and it is difficult to detect bacteria that require special culture conditions; once again limited by the safety protection conditions of domestic laboratories, laboratory staff have a high risk of infection when isolating and cultivating pathogenic bacteria; the final culture The method has high requirements on the experimental conditions and requires many types of culture medium. The detection method of bacterial culture cannot be used in township hospitals, community medical units and outdoors, which is easy to cause delays to patients.
[0007] For the common PCR (Polymerase Chain Reaction, Polymerase Chain Reaction) method for identifying pathogenic microorganisms, because of its high requirements for the laboratory, special equipment is required, and it is easy to appear Disadvantages such as false positives and cross-contamination are also not conducive to the development of its application

Method used

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  • LAMP (Loop-Mediated Isothermal Amplification) primer group, micro-fluidic chip and kit for detecting reproductive tract pathogenic microorganisms
  • LAMP (Loop-Mediated Isothermal Amplification) primer group, micro-fluidic chip and kit for detecting reproductive tract pathogenic microorganisms
  • LAMP (Loop-Mediated Isothermal Amplification) primer group, micro-fluidic chip and kit for detecting reproductive tract pathogenic microorganisms

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0046] Design and preparation of LAMP primer set for detection of reproductive tract pathogenic microorganisms

[0047] Housekeeping genes (HKG) are a general term for a class of genes that are expressed stably in different tissues and are less disturbed by the environment. Housekeeping gene detection has been widely used in the field of species evolution analysis, identification and safety monitoring of complex biological samples. The glucokinase gene (glucokinase, glk) is one of the housekeeping genes of Streptococcus agalactiae. Studies have determined the variable nucleotide sites of the glk gene in 152 Streptococcus agalactiae strains, and its percentage is 1.5%. Ubiquitous and conserved in Streptococcus, it can be used as a specific gene for bacterial identification. The bacterial gene gyrA encodes the A subunit of DNA gyrase (DNAgyrase), which plays an important role in DNA replication, transcription and repair. The GyrA gene exists in the form of a single copy in mos...

Embodiment 2

[0054] Preparation and use of a kit for detecting pathogenic microorganisms in the reproductive tract

[0055] The kit includes microfluidic chip and constant temperature amplification MIX.

[0056] 2.1 Preparation of reagents for detecting pathogenic microorganisms in the reproductive tract

[0057] The reagents for detecting pathogenic microorganisms in the reproductive tract provided by the present invention are composed as follows:

[0058] 35μL isothermal amplification MIX, 35μL template, 70μL in total. Among them, the constant temperature amplification MIX is provided by Baikangxin, including Isothermal Amplification Buffer, Betaine, BSA solution, MgSO 4 , 20×EvaGreen, dATP, dTTP, dCTP, dGTP, Bst2.0 WarmStart DNA polymerase, UNGase, dUTP. The concentration of each primer group in the reaction system is shown in Table 2.

[0059] Table 2 Final concentration of primers in LAMP reaction system

[0060]

[0061] 2.2 Microfluidic reaction chip loaded with primer set ...

Embodiment 3

[0080] Specificity of Detection Loop Mediated Isothermal Amplification Microfluidic Chip

[0081] The 10 bacteria related to reproductive tract infection used in the specificity experiment were: Escherichia coli, Enterococcus faecium, Staphylococcus epidermidis, Streptococcus dysgalactiae, Klebsiella pneumoniae, Bacteroides fragilis, Proteus mirabilis, Enterobacter cloacae , Staphylococcus aureus, and Streptococcus parahaemolyticus all come from the clinical isolates of the Third People's Hospital of Chengdu, and use the Baikangxin nucleic acid rapid extraction kit to extract DNA for amplification detection. The extraction method is the same as 2.3. 1. Take 2 μL and 35 μL of DNA from each of the above ten species of bacteria to amplify MIX, make up the system to 70 μL with DEPC water, mix well, inject the chip into the supporting instrument for detection according to the operation in 2.3.3.

[0082] The test results showed that none of the ten kinds of pathogenic bacteria rel...

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PUM

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Abstract

The invention provides a LAMP (Loop-Mediated Isothermal Amplification) primer group, a micro-fluidic chip and a kit for detecting reproductive tract pathogenic microorganisms, and belongs to the technical field of reproductive tract infection detection. The LAMP primer group comprises a streptococcus agalactiae detection primer group, an enterococcus faecalis primer group, a gardnerella vaginosisprimer group, a Candida albicans primer group and a Chlamydia trachomatis primer group. The above LAMP primer group is fixed on the micro-fluidic chip. The LAMP primer group, the micro-fluidic chip and the kit can quickly, sensitively and accurately detect streptococcus agalactiae, enterococcus faecalis, gardnerella vaginosis, Candida albicans and Chlamydia trachomatis by high repeatability.

Description

technical field [0001] The invention belongs to the technical field of reproductive tract infection detection, and in particular relates to a LAMP primer set, a microfluidic chip and a kit for detecting reproductive tract pathogenic microorganisms. Background technique [0002] Reproductive tract infection (RTI) refers to a group of infectious diseases that occur in the reproductive system. Female RTI is a global social and public health problem. It is a general term for the infection of the female reproductive system by pathogenic microorganisms such as bacteria, viruses, Candida, Trichomonas, Chlamydia, and Mycoplasma. Wide range of features. [0003] Infection is the source of many diseases. If the reproductive tract infection is not timely diagnosed and treated correctly, it can increase the risk of AIDS and cervical cancer, and cause infertility, ectopic pregnancy, miscarriage, stillbirth, and death. Complications such as childbirth, premature birth, congenital infect...

Claims

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Application Information

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IPC IPC(8): C12Q1/689C12Q1/6895C12Q1/6844C12Q1/6837C12Q1/04C12N15/11C12R1/46C12R1/01C12R1/725
CPCC12Q1/689C12Q1/6895C12Q1/6844C12Q1/6837C12Q2531/119Y02A50/30
Inventor 孙群许文明董凯鞠丹姚小青
Owner TIANJIN CHASE SUN PHARM CO LTD
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