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AETCA (anchored-extension and telomeric complements amplification) detection reagent kit for telomerase and detection method

A detection kit, telomerase technology, applied in the direction of microbial determination/inspection, biochemical equipment and methods, etc., can solve the problems of reduced sensitivity, limited applicability, difficult quantitative PCR, etc., to improve sensitivity and specificity , the operation is simple and easy, and the effect of improving the amplification efficiency

Active Publication Date: 2013-01-16
ZHEJIANG JFK BIOLOGICAL TECH
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0004] The traditional TRAP method requires tedious polyacrylamide gel electrophoresis and staining steps
Since then, although many scholars have made improvements, especially the introduction of internal standards has enabled more accurate semi-quantitative determinations with the help of certain analyzers, these improvements are only in the post-PCR detection methods. The TRAP-PCR core reaction used are the same, thus the following inherent defects of the TRAP method cannot be improved:
[0005] (1) Low amplification efficiency
Because the TRAP method directly uses the product of the extension reaction of telomerase as the template for PCR, the obtained PCR products are a series of bands ranging in size from tens of bp to hundreds of bp, and the uncertainty of the amplified product leads to Amplification efficiency is greatly limited, thus reducing sensitivity;
[0006] (2) The problem of specificity
The problem derived from the uncertainty of TRAP amplification products is that the result analysis is easily interfered by non-specific PCR amplification;
[0007] (3) Poor repeatability / stability
Because the TRAP method directly adds the cell lysate to the PCR system, and the cell lysate often contains many components that inhibit the PCR reaction, so it is easy to cause the failure of the entire test;
[0008] (4) System limitations on sensitivity
The volume of cell lysate that can be added to the detection reaction system generally cannot exceed 4% of the total volume, which limits the sensitivity of the detection;
[0009] (5) The applicability is limited and it is not suitable for detecting the effect of telomerase inhibition
[0010] (6) It is difficult to combine the implementation of fluorescent real-time quantitative PCR
The main improvement of this method to the TRAP method is to change the indeterminate amplification products of different sizes in the TRAP method into a specific amplified fragment, but because it is also the coupling of telomerase extension reaction and PCR, it cannot be ruled out. Improved inhibition of PCR by cell lysates, therefore not as good in terms of reproducibility / stability etc.
In addition, reagents (dTTP and Taq enzyme) need to be replenished tube by tube in the middle of the reaction, which is also cumbersome
[0012] Non-PCR detection methods use isotopes, fluorescence, chemiluminescence, etc. to directly analyze and measure telomerase extension reaction products. These methods have not been widely used due to their limited sensitivity.

Method used

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  • AETCA (anchored-extension and telomeric complements amplification) detection reagent kit for telomerase and detection method
  • AETCA (anchored-extension and telomeric complements amplification) detection reagent kit for telomerase and detection method
  • AETCA (anchored-extension and telomeric complements amplification) detection reagent kit for telomerase and detection method

Examples

Experimental program
Comparison scheme
Effect test

Embodiment 1

[0052] Example 1: Washing to remove non-fixed probe BT

[0053] 50ul extension hybridization buffer, in which 1nmol / L probe BT was added, was added to a 0.2ml PCR thin-walled tube, incubated at 25°C for 10min, and incubated at 55~70°C for 5~15min, then blotted the liquid in the tube, and used TBST Wash with buffer solution for 1, 3, 5, 7, 9 or 12 times, add 50ul PCR reaction solution, and perform PCR program (94°C 3min pre-denaturation, then 40 cycles of 94°C 3s, 66°C 30s, two-step method), SYBR green I fluorescence quantitative analysis, the results are shown in the table below. The results showed that the number of washes reached and exceeded 5 times, and the probe BT no longer had a stronger amplification signal than the blank control (the Ct value was equivalent to that of the blank), indicating that the washing step could completely wash away unbound probe DNA.

[0054] Composition of PCR reaction solution: 50mmol / L KCl, 1.5mmol / L MgCl 2 , 0.2mmol / L dNTP, 5% DMSO, 0.05%...

Embodiment 2

[0060] Example 2: Fabrication of anchor tubes by magnetic bead method

[0061]TBST buffer 20ul, containing 10ug Dynabeads? M-280 streptavidin magnetic beads and 2pmol biotinylated telomerase primer ATS (biotin is modified to the 5' end when the primer is synthesized), loaded into 0.2ml PCR In a thin-walled tube, at room temperature for 1 hr, use a magnet to adsorb the magnetic beads on the tube wall, blot the liquid in the tube, add 50ul TBST buffer, mix well, blot dry, and wash repeatedly in this way for a total of 6 times, and finally blot dry; add 50ul TE Buffer solution, and then use a magnet to adsorb the magnetic beads in the tube wall, blot the liquid in the tube, add 20ul cell lysate supernatant (A549 cells are cultured in a 24-well plate (10~10000 cells / well), and absorb the culture solution , + 200ul lysis buffer, pipette repeatedly, transfer to a 1.5 ml centrifuge tube, place on ice for 20 minutes, centrifuge at 4°C, 15000 rpm for 20 minutes, take the supernatant to...

Embodiment 3

[0063] Embodiment 3: direct PCR in-tube coupling method makes anchor tube

[0064] TBST buffer 50ul, containing 5pmol biotinylated telomerase primer ATS, put into a streptavidin-coated 0.2ml PCR thin-walled tube, room temperature for 1hr, blot the liquid in the tube, add 100ul TBST buffer, and pour Mix well, blot dry, wash repeatedly in this way for a total of 3 times, and finally blot dry; add 100ul TE buffer, then blot the liquid in the tube, add 50ul cell lysate supernatant (same as Example 2), leave at room temperature for 1hr, blot dry, Add 40ul extension hybridization buffer (containing 0.1nmol / L probe BT), then add 10ul cell lysate supernatant, incubate at 30°C for 30min, and incubate at 64°C for 10min, then blot the liquid in the tube, wash 7 times with TBST buffer, Add 50ul of PCR reaction solution (same as Example 1), perform PCR program (93°C 3min pre-denaturation, then 40 cycles of 93°C 3s, 62°C 30s, two-step method), SYBR fluorescence quantitative analysis, the re...

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Abstract

The invention provides an AETCA (anchored-extension and telomeric complements amplification) detection reagent kit for telomerase and a detection method. The reagent kit comprises an anchored PCR (polymerase chain reaction) tube, a probe BT (SEQ ID No.2), PCR primer, denaturing lysis buffer, extension hybridization buffer, PCR buffer and washing buffer, wherein telomerase primer ATS (SEQ ID No.1) are fixed in the anchored PCR tube. By utilizing a part of probe sequence (the probe BT) complementary with a telomere repetitive sequence as a template, the probe is combined on the telomere repetitive sequence synthesized by the telomerase in a multicopy manner, and accordingly, amplification of the probe BT can be kept in efficient fixed length though the length of the telomere repetitive sequence is not constant, and the defects of the TRAP (tartrate resistant acid phosphatase) method are overcome. The detection method is convenient and easy to operate, sensitivity and specificity of activity detection of the telomerase can be improved, and the detection method is applicable to detection of various sources including cells or tissues of clinical samples such as sputum.

Description

(1) Technical field [0001] The invention relates to a telomerase anchored extension telomere sequence complementary amplification (Anchored-Extension and Telomeric Complements Amplification, AETCA) detection kit and detection method. (2) Background technology [0002] Telomerase (telomerase) is a special reverse transcriptase, which is a ribonucleoprotein (RNP) complex composed of RNA and protein. It contains 3 main components: telomerase RNA (hTR) template, telomerase catalytic subunit (hTERT) and telomerase-related protein (hTLP). hTR is the template for telomerase extension reaction, about 450 bases, which contains the template sequence of 5'-CUAACCCUAAC-3', hTERT is the protein catalytic subunit of telomerase reverse transcriptase, hTLP is telomerase adjustment unit. The main function of telomerase is to use the 3' end of the chromosome end (telomere) as a primer, and use its own RNA as a template to synthesize a telomere-TTAGGG-repeat sequence and add it to the end of...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C12Q1/68C12Q1/48
Inventor 陈燃伍迪金晓铮
Owner ZHEJIANG JFK BIOLOGICAL TECH
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