Application of dopamine receptor antagonist chlorprothixene in treatment of acute myeloid leukemia
A receptor antagonism, acute myeloid technology, used in the field of biomedicine to achieve good safety effects
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Embodiment 1
[0103] Example 1, the role of the target genes co-regulated by the three fusion proteins PML-RARA, AML1-ETO and CBFb-MYH11 in AML disease
[0104] Download three sets of ChIP-seq data about fusion proteins PML-RARA, AML1-ETO and CBFb-MYH11 on the public database GEO, the three sets of data are GSE18886, GSE23730 and GSE46044 respectively. The first is to analyze and control the quality of Raw reads to remove low-quality reads and various contaminated fragments. The software used is FastQC; the second is to locate peaks. For different data quality, choose a relatively appropriate mapping method. Different numbers of mismatches are allowed to get the data. Based on these sequences mapped to the genome and their abundance, find statistically significant site peaks. The software used is MACS 2.0 to obtain site peaks. The nearest RefSeq gene for each peak is identified as a cancer fusion protein The target gene of is displayed with IGV software for each peak value obtained.
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Embodiment 2
[0111] Example 2, Telden is identified as a potential drug for the treatment of AML by means of computational bioinformatics
[0112] First, the 594 target genes regulated by the three fusion proteins PML-RARA, AML1-ETO and CBFb-MYH11 were named gene set set1, and the modulated gene set caused by adding all-trans retinoic acid to NB4 cells was named For gene set set2, both gene sets set1 and set2 were considered as potential therapeutic targets. The overlap between potential therapeutic targets and differential gene sets of each drug was then counted to determine meaningful drugs for AML treatment. Use the cMAP database to mine potential drugs that have an impact on AML, such as Figure 7 As shown, the modulated gene sets caused by drug treatment in the cMAP database are represented by T1, T2, T3...Tn respectively. The method of cumulative hypergeometric test enrichment analysis was used to screen the important drugs that could induce the differential expression of Set1. Fi...
Embodiment 3
[0114] Example 3, cell viability detection, cell morphology detection and upper flow cytometry detection of cell cycle
[0115] Four cell lines were selected, namely NB4, KasuMi-1, K562 and U937. NB4, KasuMi-1, K562 and U937 are suspension human acute leukemia cell lines. In RPMI-1640 medium, the growth density of cells is maintained at 1x105 to 5x105 cells / ml. In order to prevent the cells from being polluted, 2 mM L-glutamine, 100 U / ml penicillin and 100 μg / ml streptomycin were added to the culture medium, and they were routinely cultured at 37°C in an incubator under 5% CO2 saturated humidity conditions.
[0116] The cck8 kit was used to detect the cell viability of NB4, KasuMi-1, K562 and U937 under different concentration gradients. Inoculate the cell suspension (100 μl / well) in a 96-well plate, the number of inoculated cells is about 5x103, and place the culture plate in an incubator at 37°C and 5% CO2 for 24 hours. Set up different drug concentration treatments, the T...
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