LAMP primer combination for detecting 8 environmental pathogens of dairy cow mastitis and application thereof
A primer combination and primer set technology, which is applied in the direction of microorganism-based methods, microorganisms, and microorganism determination/inspection, can solve the problems of long PCR detection time, heavy workload, and low sensitivity
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Embodiment 1
[0235] Embodiment 1, the preparation of kit
[0236] The kit consists of eight LAMP primer sets, each for the detection of one environmental pathogen of dairy mastitis.
[0237] The primer set used to detect E. coli is as follows (5'→3'):
[0238] Outer primer F3 (SEQ ID NO: 1): TGTGGAATTGATCAGCGTT;
[0239] Outer primer B3 (SEQ ID NO: 2): TGATTATTGACCCACACTTTG;
[0240] Internal primer FIP (SEQ ID NO: 3): TCTGCATCGGCGAACTGATCGGGTGGGAAAGCGCGTTAC;
[0241] Internal primer BIP (SEQ ID NO: 4): TCTGGTATCAGCGCGAAGTCTAATGAGTGACCGCATCGA;
[0242] Loop primer LF (SEQ ID NO: 5): GCAATTGCCCGGCTTTCTT;
[0243] Loop primer LB (SEQ ID NO: 6): GCAGGCCAGCGTATCGT.
[0244] The primer set used to detect Klebsiella pneumoniae is as follows (5'→3'):
[0245] Outer primer F3 (SEQ ID NO: 7): ATACAAAAACACCAGTGTAGG;
[0246] Outer primer B3 (SEQ ID NO: 8): GCCGCCAGTTTGTTTCAG;
[0247] Internal primer FIP (SEQ ID NO: 9): CGTTGAGATTTGCGAAGTACCAAGAATCAAATATGCTGCAAATGTG;
[0248] Internal prime...
Embodiment 2
[0294] Embodiment 2, specificity
[0295] Test sample 1: Escherichia coli ( 8739 TM ).
[0296] Test sample 2: Klebsiella pneumoniae ( 13883 TM ).
[0297] Test sample 3: Pseudomonas aeruginosa (CVCC 3359).
[0298] Test sample 4: Streptococcus dysgalactiae ( 12388 TM ).
[0299] Test sample 5: Streptococcus uberis ( 700407 TM ).
[0300] Test sample 6: Salmonella typhimurium ( 14028 TM ).
[0301] Test sample 7: Proteus mirabilis (CVCC 1969).
[0302] Test sample 8: Candida albicans (CGMCC 2.2086).
[0303] Each sample to be tested carries out the following steps respectively:
[0304] 1. Extract the genomic DNA of the sample to be tested.
[0305] 2. Using the genomic DNA extracted in step 1 as a template, each primer set prepared in Example 1 was used to perform loop-mediated isothermal amplification.
[0306] Reaction system (10 μL): 7.0 μL reaction solution (product of Boao Bio Group Co., Ltd., catalog number CP.440020), 1 μL primer mixture, 1 μL te...
Embodiment 3
[0318] Embodiment 3, sensitivity result
[0319] Test sample 1: Escherichia coli ( 8739 TM ).
[0320] Test sample 2: Klebsiella pneumoniae ( 13883 TM ).
[0321] Test sample 3: Pseudomonas aeruginosa (CVCC 3359).
[0322] Test sample 4: Streptococcus dysgalactiae ( 12388 TM ).
[0323] Test sample 5: Streptococcus uberis ( 700407 TM ).
[0324] Test sample 6: Salmonella typhimurium ( 14028 TM ).
[0325] Test sample 7: Proteus mirabilis (CVCC 1969).
[0326] Test sample 8: Candida albicans (CGMCC 2.2086).
[0327] 1. Extract the genomic DNA of the sample to be tested, and perform gradient dilution with sterile water to obtain each dilution.
[0328] 2. Using the dilution obtained in step 1 as a template, the primer sets prepared in Example 1 were used to perform loop-mediated isothermal amplification.
[0329] When the sample to be tested is the sample to be tested 1, the loop-mediated isothermal amplification is performed using primer set I. When the s...
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