Oligonucleotide molecule used for inhibiting expression of mRNA of target gene and composition set thereof
A target gene and a complete set of technologies, applied in the field of molecular biology, can solve problems such as time-consuming and labor-intensive
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Embodiment 1
[0078] Embodiment 1, the preparation of siRNA
[0079] All single siRNAs designed can target all transcripts of the target gene, and the design method refers to the method of Elbashir et al.2002; Paddison et al.2002; Reynolds et al.2004; Ui-Tei et al. ,Harborth,J.,Weber,K.,and Tuschl,T.2002.Analysis of gene function in somatic mammalian cells using small interfering RNAs.Methods 26:199–213; Paddison,P.J.,Caudy,A.A.,Bernstein,E., Hannon, G.J., and Conklin, D.S. 2002. Short hairpin RNAs (shRNAs) induce sequence-specific silencing inmammalian cells. Genes & Dev. 16:948–958; Reynolds, A., Leake, D., Boese, Q., Scaringe, S ., Marshall, W.S., and Khvorova, A. 2004. Rational siRNA design for RNAinterference. Nat. Biotechnol. 22:326–330; Ui-Tei, K., Naito, Y., Takahashi, F., Haraguchi, T. , Ohki-Hamazaki, H., Juni, A., Ueda, R., and Saigo, K.2004.Guidelines for the selection of highly effective siRNA sequences for mammalian and chick RNAinterference. Nucleic Acids Res.32:936–948); T...
Embodiment 2
[0093] Embodiment 2, siRNA cell level inhibition test
[0094] The siRNAs corresponding to the TP53, BIRC5, CTNNB1, COPS5, STAT3, VEGFA, KRAS target genes shown in Table 2 prepared in Example 1 were separately transfected into HeLa cells (derived from ATCC), as follows:
[0095] 1. LF2K transfection
[0096] 100 μL LF2K transfection system: 1 μL LF2K (Invitrogen, 11668019), 5 μL siRNA (final concentration 100 nM) and 94 μL Opti-MEM cell culture medium (Thermo Fisher Scientific, 31985070).
[0097] The above siRNAs are siRNAs corresponding to the target genes of TP53, BIRC5, CTNNB1, COPS5, STAT3, VEGFA and KRAS prepared in Example 1, respectively.
[0098] HeLa cells were cultured on a cell culture plate, and then 100 μL of the above-mentioned transfection system was added to each well, and transfected for 48 hours to obtain cells transfected with siRNAs corresponding to different target genes.
[0099] 2. RT-PCR detection inhibition rate
[0100] After 48 hours of transfect...
Embodiment 3
[0114] Embodiment 3, the preparation of complete set of siRNA
[0115] 1. Design principles
[0116] A set of siRNA consists of 5-10 siRNA molecules;
[0117] Each siRNA is composed of 25 nucleotides SS sense strand and its reverse complementary antisense strand AS, and is blunt-ended; each siRNA is complementary to the target sequence on the target gene through its antisense strand;
[0118] The AS strand and the SS strand are completely reverse complementary, the AS strand is completely reverse complementary to the target sequence on the target gene, the 7 consecutive nucleotides from the 5' end and the 7 consecutive nucleotides from the 3' end of the SS are all After 2'-O-Me modification.
[0119] The target genes are shown in Table 1, and the siRNAs corresponding to the target genes are shown in Table 2.
[0120] The set of siRNAs for target genes may include 5, 6, 7 or 10 siRNAs, and the grouping conditions are shown in Table 5.
[0121] Table 5 Composition of a compl...
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