Diagnosis and treatment markers of hypopharyngeal carcinoma and its application
A pharyngeal cancer and material technology, applied in the field of tumor diagnosis, treatment, and prognosis prediction, can solve the problems of swallowing organ dysfunction, affecting the quality of life of patients, and many complications
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Embodiment 1
[0071] Example 1 Gene Chip Screening for Differentially Expressed Genes
[0072] 1. Materials:
[0073] Eight patients with primary hypopharyngeal carcinoma underwent surgical resection of cervical lymph node dissection at the same time, and the normal hypopharyngeal mucosa tissues of nine patients with non-hypopharyngeal carcinoma were taken as controls. All cancer tissues were pathologically confirmed as hypopharyngeal carcinoma. All patients with primary hypopharyngeal carcinoma did not receive radiotherapy and chemotherapy before operation, and the clinical data of all cases were complete.
[0074] 2. Obtaining tissue RNA
[0075] Total tissue RNA was extracted using the Trizol one-step method.
[0076] 3. Determination of RNA purity and concentration
[0077] Take 1 μl of RNA solution, measure OD260 and OD280 with the instrument, the RNA concentration is OD260 value × dilution factor × 40 / 1000, calculate OD260 / OD280, the ratio of 1.7-2.0 means that the RNA solution ha...
Embodiment 2
[0091] Example 2 Large sample validation of differentially expressed genes screened out
[0092] Based on the results of the previous high-throughput transcriptome deep sequencing, and according to the size of the P value, we selected the SCLY gene for verification.
[0093] 1. Sample collection
[0094] According to the method of Example 1, 45 cases of hypopharyngeal cancer tissues and 50 cases of normal control tissues were collected.
[0095] 2. Validation at the mRNA level
[0096] 2.1 Extract tissue RNA
[0097] Step is with embodiment 1.
[0098] 2.2 Reverse transcription
[0099] Reverse transcription using Primescript 1 st strand cDNA synthesis kit kit, the operation steps are as follows:
[0100] (1) Add the following reaction liquid in the microcentrifuge tube, as shown in Table 1:
[0101] Table 1 Reaction liquid
[0102] Reagent dose RNA 2.0μg dNTP 1.0μl Oligo(dT) 2.0μl RNase free dH 2 o
Add to 10.0μl
[010...
Embodiment 3
[0128] Example 3 SCLY gene overexpression
[0129] 1. Plasmid construction
[0130] Amplification primers are designed according to the coding sequence of SCLY gene, and the design of primers is well known to those skilled in the art. Amplify the coding sequence of the full-length SCLY gene from the cDNA library of adult fetal brain (clontech company, article number: 638831), insert the above cDNA sequence into the eukaryotic cell expression vector pcDNA3.1, and connect the obtained recombinant vector pcDNA3.1 -SCLY was used in subsequent experiments.
[0131] 2. Culture and transfection of hypopharyngeal carcinoma cells
[0132] 2.1 Cell culture
[0133] Hypopharyngeal cancer FADU cells were placed in RPMI 1640 medium containing 10% fetal bovine serum (FBS), penicillin 100 U / ml, and streptomycin 100 μg / ml at 37°C, 5% CO 2 , cultivated in a saturated humidity environment.
[0134] 2.2 Cell transfection
[0135] (1) The day before transfection, 0.5-2*10 5 Tumor cells wer...
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